Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0333.Seq
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721     28   4.0  
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    28   5.3  
06_03_1480 - 30432718-30432996,30433151-30434123,30434251-304345...    27   7.1  
04_03_0027 + 9667508-9668800                                           27   7.1  
01_06_1749 - 39636951-39638102                                         27   7.1  
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405...    27   9.3  
06_01_0120 - 926226-926289,926821-926887,927122-927170,927257-92...    27   9.3  

>11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721
          Length = 287

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 113 YISRWVAHLPCRFLWAPVST*HQMXCELVHP 21
           Y+S+WV  +PCR  +A  +   QM  E++ P
Sbjct: 38  YVSKWVEAMPCRAAYAKHA--RQMFHEIIFP 66


>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 85  LVDFYGLQYPLNTRWXV 35
           L+ FY L YPLN  W V
Sbjct: 614 LITFYNLTYPLNRNWHV 630


>06_03_1480 -
           30432718-30432996,30433151-30434123,30434251-30434585,
           30434929-30435075,30435498-30435569
          Length = 601

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 85  LVDFYGLQYPLNTRWXV 35
           L+ FY L YPLN  W V
Sbjct: 525 LITFYNLTYPLNRTWHV 541


>04_03_0027 + 9667508-9668800
          Length = 430

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 113 YISRWVAHLPCRFLWAPVST*HQMXCELVHP 21
           Y+S+WV  +PCR   A     H+M  E++ P
Sbjct: 286 YVSKWVEAMPCRA--ANTKHAHRMFDEIIFP 314


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 128 SIVTTAAPPFKPKRITASRQK*AGRWYLSARTHK 229
           S+ + AAPPF P RIT+      GR +  +   K
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSVARK 198


>07_01_0547 +
           4052618-4052659,4055575-4055741,4055839-4056556,
           4056678-4057114,4057241-4057315,4057490-4057673,
           4057759-4057854,4057952-4058018,4058556-4058715,
           4058808-4059199,4059254-4059300
          Length = 794

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 349 QNWYTEELERLLKFAAXGAVPTAYKVE 429
           +N  TEE++  L + A G++PT YKVE
Sbjct: 286 KNISTEEIQDNL-YEANGSIPTGYKVE 311


>06_01_0120 -
           926226-926289,926821-926887,927122-927170,927257-927313,
           927826-927897,928145-928236,928331-928403,928870-928944,
           929207-929314,929372-929422,929834-929959,930324-930362,
           930452-930535,931018-931109,931217-931300,931410-931524
          Length = 415

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 253 HL*FYGFHLYYTMLSLHRGSQS*TFFEYVIH 345
           H+ FY  HL Y +    RG+Q  + F  ++H
Sbjct: 199 HVPFYRLHLKYHLWKQFRGAQRRSIFRLLLH 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,264
Number of Sequences: 37544
Number of extensions: 239719
Number of successful extensions: 415
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)