Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0333.Seq
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12430.1 68416.m01548 expressed protein ; expression supporte...    29   2.6  
At3g01680.1 68416.m00099 expressed protein                             28   3.4  
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c...    28   4.5  
At5g35950.1 68418.m04329 jacalin lectin family protein similar t...    27   5.9  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    27   5.9  

>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 423 FVCSWNSAPSGKLKQSFQFLSVPILL 346
           FV  WNS  +GKLK+S   L + +LL
Sbjct: 138 FVGIWNSQDAGKLKRSKHELEIAVLL 163


>At3g01680.1 68416.m00099 expressed protein 
          Length = 740

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 20  MDGRAHXPSGVKW--ILEPIEIYKVNAPPTLRYKF*DL 127
           +DG++H P  V W  +++PIE ++    P L+ KF DL
Sbjct: 390 VDGKSHMPYEVVWVPVVDPIEDFE--RSPILQKKFEDL 425


>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 673

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 85  LVDFYGLQYPLNTRWXV 35
           L+ FYGL +PLN  W V
Sbjct: 598 LITFYGLTHPLNKAWHV 614


>At5g35950.1 68418.m04329 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 444

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 364 QCTNFANELRTQKMFTIDFPGEGITS 287
           +C  +  ++ TQ  FTI++P E ITS
Sbjct: 196 ECYEYGVKIGTQNQFTINYPYECITS 221


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 103 GGWRIYLVDFYGLQYPLNTRWXVSSSIHQS 14
           GG  +  + F+G  +PL  RW V    H+S
Sbjct: 529 GGLPVGWLTFFGQTFPLEKRWNVGGLGHES 558


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,385,715
Number of Sequences: 28952
Number of extensions: 189525
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)