Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0332.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    64   2e-09
UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep: ...    41   0.016
UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;...    40   0.038
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    38   0.20 
UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    33   3.3  
UniRef50_Q873K2 Cluster: Related to SWI/SNF complex 60 kDa subun...    33   5.8  

>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 64.1 bits (149), Expect = 2e-09
 Identities = 36/60 (60%), Positives = 39/60 (65%)
 Frame = -2

Query: 253 LTATILVYXXXXXXXXXXXTRLALQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG 74
           LTA  L+Y           TRLALQ  LVK FKV SF+L+GL RV Y YFSSLPPR GSG
Sbjct: 44  LTAATLIYAIGAGITAAAGTRLALQWILVKGFKVDSFQLQGLERVLYCYFSSLPPRVGSG 103


>UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep:
           LRRG00114 - Rattus norvegicus (Rat)
          Length = 223

 Score = 41.1 bits (92), Expect = 0.016
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = -2

Query: 61  LLPSLDVVAVSQAPSPESNP 2
           LLPSLDVVAVSQAPSPE NP
Sbjct: 167 LLPSLDVVAVSQAPSPELNP 186


>UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 493

 Score = 39.9 bits (89), Expect = 0.038
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = -1

Query: 131 PRKSPVSLFFVTTSPCREW 75
           PRKSPV LFFVTTSP REW
Sbjct: 24  PRKSPVLLFFVTTSPGREW 42


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 37.5 bits (83), Expect = 0.20
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = -2

Query: 94  PPRAGSG*FARLLPSLDVVAVSQAPSP 14
           PP+  SG  +RLL  +D+VA+SQAPSP
Sbjct: 46  PPKVSSGKVSRLLLPVDIVAISQAPSP 72



 Score = 34.3 bits (75), Expect = 1.9
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -1

Query: 221 SWNYRGCWHQTCP 183
           SWNYR CWHQT P
Sbjct: 7   SWNYRSCWHQTGP 19


>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 30/85 (35%), Positives = 40/85 (47%)
 Frame = -2

Query: 259 ELLTATILVYXXXXXXXXXXXTRLALQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAG 80
           ++LTATIL+Y           TRLALQL   K+   +    +  +  PY   S       
Sbjct: 312 DVLTATILIYAIGAGITAAAGTRLALQLIFGKVLSSHHSNYKTKI-WPYIVIS------- 363

Query: 79  SG*FARLLPSLDVVAVSQAPSPESN 5
                  L  L+ +A+SQAPSPESN
Sbjct: 364 ----CHYLSYLE-LAISQAPSPESN 383


>UniRef50_Q873K2 Cluster: Related to SWI/SNF complex 60 kDa subunit;
           n=3; Sordariomycetes|Rep: Related to SWI/SNF complex 60
           kDa subunit - Neurospora crassa
          Length = 489

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 23/68 (33%), Positives = 29/68 (42%)
 Frame = -1

Query: 416 GPTSTLTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQLRAFNRNNF 237
           G   TL  E    +     R  ERRL   M RKR+ I  D+V R       LR +  N+ 
Sbjct: 47  GVEETLVGEGDVAVAYKKLRDFERRLDATMSRKRLDI-VDSVSRNAKRYKTLRVWITNSV 105

Query: 236 SIRYWSWN 213
             +YW  N
Sbjct: 106 EDQYWQNN 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,426,821
Number of Sequences: 1657284
Number of extensions: 10786839
Number of successful extensions: 24324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24322
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)