Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0332.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    29   1.8  
09_01_0019 + 403078-404211                                             29   3.2  
12_01_0010 + 74517-74529,76294-76394,76495-76526,76652-76662,804...    28   5.6  
11_01_0010 + 78629-78641,80422-80522,80633-80664,80790-80800,845...    28   5.6  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   5.6  

>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = -1

Query: 434  VQSKIVGPTSTLTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQLRA 255
            + +K     S    EH D+ L+L R+  +      MLR    +TA+A       +  + +
Sbjct: 1041 LSAKCAAAKSAAQSEH-DKNLLLQRQLDDSLREITMLRSSKIMTAEAERENSNLKNLVES 1099

Query: 254  FNRNNFSIRY 225
             ++NN S+ Y
Sbjct: 1100 LSKNNSSLEY 1109


>09_01_0019 + 403078-404211
          Length = 377

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 9   DSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 119
           DSG GA ++A   K  SRR  +      GSD   R+G
Sbjct: 326 DSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>12_01_0010 +
           74517-74529,76294-76394,76495-76526,76652-76662,
           80420-80924,80999-81181,81282-81373,81491-81764,
           81840-82053,82158-82228,82403-82509,82967-83016,
           83125-83208,84060-84119,84196-84285,84824-84900,
           85022-85106,85224-85304,85492-85595,85793-85842,
           86625-86731,87603-87725,87838-87889,88090-88202,
           88265-88405,88513-88602
          Length = 969

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -1

Query: 401 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQLRAFNRNNFSIRYW 222
           LTE +R+ IL  N RFL+   TD   R  V    DA+  Q  A++ ++  N      ++W
Sbjct: 485 LTEYNREEILGRNCRFLQGPETD---RATVRKIRDAIDNQ--AEVTVQLINYTKSGKKFW 539

Query: 221 S 219
           +
Sbjct: 540 N 540


>11_01_0010 +
           78629-78641,80422-80522,80633-80664,80790-80800,
           84559-85063,85136-85318,85419-85510,85628-85901,
           85977-86190,86295-86365,86540-86646,87104-87153,
           87262-87345,88197-88256,88333-88422,88961-89037,
           89160-89244,89362-89442,89630-89733,89931-89980,
           90764-90870,91743-91865,91978-92029,92230-92342,
           92404-92544,92656-92745
          Length = 969

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -1

Query: 401 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQLRAFNRNNFSIRYW 222
           LTE +R+ IL  N RFL+   TD   R  V    DA+  Q  A++ ++  N      ++W
Sbjct: 485 LTEYNREEILGRNCRFLQGPETD---RATVRKIRDAIDNQ--AEVTVQLINYTKSGKKFW 539

Query: 221 S 219
           +
Sbjct: 540 N 540


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 248 RNNFSIRYWSWNYRGC 201
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,229
Number of Sequences: 37544
Number of extensions: 307515
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)