Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0332.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.067
SB_595| Best HMM Match : CH (HMM E-Value=0)                            31   0.62 
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   5.8  
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  28   5.8  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 46  DVVAVSQAPSPESNP 2
           DVVAVSQAPSPESNP
Sbjct: 105 DVVAVSQAPSPESNP 119


>SB_595| Best HMM Match : CH (HMM E-Value=0)
          Length = 905

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
 Frame = +2

Query: 5   VRFRRGSLRNGYHIQGRQQA--RKLPTPGT 88
           VR  RG++++GY+   +QQA  RK+P PG+
Sbjct: 329 VRSNRGTIQSGYYFCKQQQAARRKIPKPGS 358


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 36  PFLRLPLRNRTL 1
           PFLRLPLRNRTL
Sbjct: 224 PFLRLPLRNRTL 235


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -2

Query: 37 AVSQAPSPESNP 2
          AVSQAPSPESNP
Sbjct: 52 AVSQAPSPESNP 63


>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 205

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 334 TICSANVSVSPRMRCTDSAAHKCNYELL 251
           T C+ NV  S  ++C DS    CN E++
Sbjct: 157 TECACNVHGSASLQCDDSGVCPCNLEVI 184


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 334 TICSANVSVSPRMRCTDSAAHKCNYELL 251
           T C+ NV  S  ++C DS    CN E++
Sbjct: 199 TECACNVHGSASLQCDDSGVCPCNLEVI 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,131,468
Number of Sequences: 59808
Number of extensions: 351782
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)