Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0332.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical
           protein R07B7.3 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 353 LERRLTDDMLRKRVSITADAVHRQRGAQMQLRAFNRNNFSIR 228
           L  +L  + LRKR +IT   V R+RG         R NF+++
Sbjct: 102 LVNKLVKNALRKRTNITTVPVVRKRGGVAASTLAARRNFALK 143


>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 538 SEVLKXNKIERDHILLFHARNIQAAFLARFEHSNLFKVKLSGPP 407
           S V    +  + + ++ + RNI+  FL  F +S  F ++L+ PP
Sbjct: 589 SRVENSRRTIKKNAIVGNDRNIEEEFLKLFSYSKDFSMELAAPP 632


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 75  GNLRACCLPWMW*PFLRLPLR 13
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 395 EEHRDRILILNRRFLERRLTDDMLRKRV 312
           EE R+R  +  RR  ERRL +D + +R+
Sbjct: 294 EEERERYRMERRRAEERRLQEDTILRRI 321


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 336 RRYAPQTCQYHRGCGAPTARRTNAT 262
           R+  P+TC Y  G G  T  RT+ T
Sbjct: 130 RQQCPRTCGYCSGSGVVTTTRTSTT 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,559,301
Number of Sequences: 27780
Number of extensions: 255903
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)