Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0332.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58140.4 68418.m07274 protein kinase family protein / non pho...    28   4.7  
At5g58140.3 68418.m07277 protein kinase family protein / non pho...    28   4.7  
At5g58140.2 68418.m07276 protein kinase family protein / non pho...    28   4.7  
At5g58140.1 68418.m07275 protein kinase family protein / non pho...    28   4.7  
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       27   6.2  

>At5g58140.4 68418.m07274 protein kinase family protein / non
           phototropic hypocotyl 1-like protein (NPL1) contains
           Pfam domains, PF00069: Protein kinase domain and
           PF00785:  PAC motif; similar to SP:O48963 Nonphototropic
           hypocotyl protein 1           (Phototropin) [Mouse-ear
           cress] {Arabidopsis thaliana}; identical to cDNA non
           phototropic hypocotyl 1-like (NPL1) GI:5391441
          Length = 689

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 401 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQLRAFNRNNFSIRYW 222
           LTE  R+ IL  N RFL+   TD    +++    DA+  QR   +QL   N      ++W
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKI---RDAIRDQREITVQL--INYTKSGKKFW 467

Query: 221 S 219
           +
Sbjct: 468 N 468


>At5g58140.3 68418.m07277 protein kinase family protein / non
           phototropic hypocotyl 1-like protein (NPL1) contains
           Pfam domains, PF00069: Protein kinase domain and
           PF00785:  PAC motif; similar to SP:O48963 Nonphototropic
           hypocotyl protein 1           (Phototropin) [Mouse-ear
           cress] {Arabidopsis thaliana}; identical to cDNA non
           phototropic hypocotyl 1-like (NPL1) GI:5391441
          Length = 915

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 401 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQLRAFNRNNFSIRYW 222
           LTE  R+ IL  N RFL+   TD    +++    DA+  QR   +QL   N      ++W
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKI---RDAIRDQREITVQL--INYTKSGKKFW 467

Query: 221 S 219
           +
Sbjct: 468 N 468


>At5g58140.2 68418.m07276 protein kinase family protein / non
           phototropic hypocotyl 1-like protein (NPL1) contains
           Pfam domains, PF00069: Protein kinase domain and
           PF00785:  PAC motif; similar to SP:O48963 Nonphototropic
           hypocotyl protein 1           (Phototropin) [Mouse-ear
           cress] {Arabidopsis thaliana}; identical to cDNA non
           phototropic hypocotyl 1-like (NPL1) GI:5391441
          Length = 915

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 401 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQLRAFNRNNFSIRYW 222
           LTE  R+ IL  N RFL+   TD    +++    DA+  QR   +QL   N      ++W
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKI---RDAIRDQREITVQL--INYTKSGKKFW 467

Query: 221 S 219
           +
Sbjct: 468 N 468


>At5g58140.1 68418.m07275 protein kinase family protein / non
           phototropic hypocotyl 1-like protein (NPL1) contains
           Pfam domains, PF00069: Protein kinase domain and
           PF00785:  PAC motif; similar to SP:O48963 Nonphototropic
           hypocotyl protein 1           (Phototropin) [Mouse-ear
           cress] {Arabidopsis thaliana}; identical to cDNA non
           phototropic hypocotyl 1-like (NPL1) GI:5391441
          Length = 915

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 401 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQLRAFNRNNFSIRYW 222
           LTE  R+ IL  N RFL+   TD    +++    DA+  QR   +QL   N      ++W
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKI---RDAIRDQREITVQL--INYTKSGKKFW 467

Query: 221 S 219
           +
Sbjct: 468 N 468


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   RVRFRRGSLRNGYHIQGRQQARKLPTPG 85
           R+ FRRG+     HIQ +Q   + P+PG
Sbjct: 499 RMGFRRGATNVQQHIQQQQLMHRNPSPG 526


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,669,270
Number of Sequences: 28952
Number of extensions: 231774
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)