Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0331.Seq
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   2.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   3.7  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    25   6.5  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 101 YLKDFKQIYILARMFISMFLNN*NKKYGKQ 190
           YLK  K I+I  RMFI+  LN   +K  K+
Sbjct: 886 YLKRMKDIFIPQRMFITDLLNVIGRKIWKK 915


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 108  KILNKYTFSHVCSYLCFLIIKIKSMENNGNIFKSL 212
            K+   Y+F+ V   L  L +K+  ++N+ N F  L
Sbjct: 1210 KVWRNYSFTAVVVVLLILTVKLIRLQNHKNFFMKL 1244


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 177 SMENNGNIFKSLENIVG 227
           S+EN  +IFKS+ NI+G
Sbjct: 289 SIENKDDIFKSILNIIG 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,720
Number of Sequences: 5004
Number of extensions: 45780
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)