Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0331.Seq
         (608 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209362-1|BAD92599.1|  539|Homo sapiens G protein-coupled recep...    30   7.3  

>AB209362-1|BAD92599.1|  539|Homo sapiens G protein-coupled receptor
           156 variant protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 86  TCFVIYLKDFKQIYILARMFISMFLNN*NKKYGKQWQHF*ISREHCRR 229
           +C + Y  DF Q++  A  F+S   N+  ++  KQW+ F    +  RR
Sbjct: 7   SCPLGYCLDFSQLWTSADTFLSCLYNSLQEEQLKQWKAFEEENQTIRR 54


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,011,059
Number of Sequences: 237096
Number of extensions: 1311302
Number of successful extensions: 1229
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)