Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0331.Seq
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical
           protein H05C05.2a protein.
          Length = 436

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 503 FIIYAIHFGKNMHTQILPN*KSVFYFPKHKILTY*KNCTQNMKSFFKNT 357
           F+ +     KN    +  N  SVF+  KHK+ +Y  +  +    FF  T
Sbjct: 14  FVEFCAEIAKNSVKPVTRNKLSVFFNKKHKLTSYPSHFARTFDRFFVET 62


>Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical
           protein F26D2.3a protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 473 NMHTQILPN*KSVFYFPKHKILTY*KNCTQNMK 375
           N+   I  N  SV Y   HK   Y  NCT N K
Sbjct: 436 NLEDDIYKNLVSVQYHENHKKSDYKLNCTSNFK 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,334
Number of Sequences: 27780
Number of extensions: 257461
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)