Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0331.Seq
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.1  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 52  VILY*IVTYILNVFCYL 102
           +I+Y I+TY+  VF YL
Sbjct: 323 IIIYTILTYMSGVFYYL 339


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 354 SSIFKKRFHVLCTIFLVGQY 413
           +S+F + F+++C + L+G +
Sbjct: 273 ASVFMRIFNLICMMLLIGHW 292


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 354 SSIFKKRFHVLCTIFLVGQY 413
           +S+F + F+++C + L+G +
Sbjct: 241 ASVFMRIFNLICMMLLIGHW 260


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 399 LVGQYFMFWEIKYTFSIRQNLCV 467
           L+G+Y +F  I  T SI   +CV
Sbjct: 311 LLGKYLLFTMILVTLSIWITVCV 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,551
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)