Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0331.Seq
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30695.2 68415.m03744 expressed protein                             29   3.2  
At2g30695.1 68415.m03743 expressed protein                             29   3.2  
At5g17700.1 68418.m02074 MATE efflux family protein similar to r...    28   5.6  
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    28   5.6  

>At2g30695.2 68415.m03744 expressed protein
          Length = 199

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 520 Q*VLHSINFCSFSSYIFNP 576
           Q ++HS++FCSF+S   NP
Sbjct: 2   QTIIHSLSFCSFNSTTINP 20


>At2g30695.1 68415.m03743 expressed protein
          Length = 199

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 520 Q*VLHSINFCSFSSYIFNP 576
           Q ++HS++FCSF+S   NP
Sbjct: 2   QTIIHSLSFCSFNSTTINP 20


>At5g17700.1 68418.m02074 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 497

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 348 VKSSIFKKRFHVLCTIFLVGQYFMFWEIKYTFSIRQNLCVHVLTEM 485
           V  S + K  ++  + F + QY   WE+   F +    CV V  E+
Sbjct: 280 VLMSGYAKDANIAISAFSICQYIYSWEMNICFGLMGAACVRVANEL 325


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 333 CESKKPLYSTSTLTVTRKRNVLKS*T*N*NSICYYRRQCSLEI*KCCHCF 184
           C  ++P Y   ++  T K   L+S     ++  YY   C+LE  + CH F
Sbjct: 27  CRRRRPSYPPLSICFTCKGKQLRS-----SAYYYYCATCNLEFHRGCHIF 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,365,656
Number of Sequences: 28952
Number of extensions: 210022
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)