Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0330.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0111 - 20217128-20217198,20217648-20217770,20217924-202186...    31   0.92 
01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942...    29   2.1  
05_04_0286 + 19833114-19834053,19834149-19834165                       28   4.9  

>11_06_0111 -
           20217128-20217198,20217648-20217770,20217924-20218637,
           20218874-20218915,20219025-20219820
          Length = 581

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +2

Query: 191 TRFVRATSTYII**NKQNGVLFFLDFIT*KIKLGSVLSTACRRGCRTTAGSCYGRTAASC 370
           T + ++   Y    NK  GV   LD +            A    C+ T  SC  R + S 
Sbjct: 186 TSYAKSMELYSKYRNKGTGVPLVLDLVVGNETCDEAKRNALSYACKATNSSCIDRPSRSG 245

Query: 371 RCCGCS 388
             C CS
Sbjct: 246 YLCNCS 251


>01_06_0582 +
           30392297-30392677,30393786-30394039,30394175-30394298,
           30394484-30394588,30395913-30396035
          Length = 328

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 278 KIKLGSVLSTACRRGCRTTAGSCYGRTAASCRC 376
           KIK    L  A +RG R   GS  G +AA C C
Sbjct: 135 KIKQKEALGVAEKRGGRRGTGSVIGSSAAGCVC 167


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 320 GCRTTAGSCYGRTAASCRCCGCSWAAFLAV 409
           G R  +G+ YG  AA   CC  SW A  AV
Sbjct: 179 GGRRPSGAAYG-AAAPPECCAVSWDAIRAV 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,467,058
Number of Sequences: 37544
Number of extensions: 155964
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)