Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0330.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 4.4
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 4.4
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 4.4
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z81132-8|CAB03429.1| 90|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81038-16|CAN99683.1| 400|Caenorhabditis elegans Hypothetical p... 27 7.7
Z81038-15|CAB02769.1| 404|Caenorhabditis elegans Hypothetical p... 27 7.7
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 311 CRRGCRTTAGSCYGRTAASCR--CCGC 385
CRR C C R CR CCGC
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGC 123
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 451 QREGGANGGDGNCSNCQKGSP 389
Q +GG GG G CS C + P
Sbjct: 88 QPQGGGGGGGGQCSTCCRPGP 108
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 311 CRRGCRTTAGSCYGRTAASCR--CCGC 385
CRR C C R CR CCGC
Sbjct: 95 CRRCCTCCRTCCCTRCCTCCRPCCCGC 121
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 311 CRRGCRTTAGSCYGRTAASCR--CCGC 385
CRR C C R CR CCGC
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGC 122
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 311 CRRGCRTTAGSCYGRTAASCR--CCGC 385
CRR C C R CR CCGC
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGC 122
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 311 CRRGCRTTAGSCYGRTAASCR--CCGC 385
CRR C C R CR CCGC
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGC 123
>Z81132-8|CAB03429.1| 90|Caenorhabditis elegans Hypothetical
protein T26E4.10 protein.
Length = 90
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Frame = +2
Query: 200 VRATSTYII**NKQNGVLFFLDFIT*KIKLGSVLSTACRRGCRTTAGSCYGRTA------ 361
+ T + ++ N++ + D + + LG ++ + GC C G T
Sbjct: 17 ISTTFSNVVQGNEETALDSTYDMVPGEGVLGQLIRAKRQWGCGCDCWGCCGPTPDPAATP 76
Query: 362 --ASCRCCGCSW 391
+C CCGC W
Sbjct: 77 APCNCGCCGCGW 88
>Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical
protein F01G10.5 protein.
Length = 824
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 73 TELKQKHG*LTLQVYTVQMALFNQI*KHREKLNDIVLNLN*ICSCNIDVYNLMK 234
+EL +K LT+QV +Q A N++ R+K +++ L + N+D+ L+K
Sbjct: 324 SELNEK---LTMQVKDLQDASENELASFRQKEKELIDELRMATNENVDLEELLK 374
>Z81038-16|CAN99683.1| 400|Caenorhabditis elegans Hypothetical
protein C25A1.9b protein.
Length = 400
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 192 LDLFVQHRRI*FNEISKTVYCFF*ILSLKKSNL 290
+D+F ++RRI E K CF I+ K +L
Sbjct: 41 MDIFAENRRIDVEEFKKNAECFLNIIRSNKIDL 73
>Z81038-15|CAB02769.1| 404|Caenorhabditis elegans Hypothetical
protein C25A1.9a protein.
Length = 404
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 192 LDLFVQHRRI*FNEISKTVYCFF*ILSLKKSNL 290
+D+F ++RRI E K CF I+ K +L
Sbjct: 41 MDIFAENRRIDVEEFKKNAECFLNIIRSNKIDL 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,744,496
Number of Sequences: 27780
Number of extensions: 154936
Number of successful extensions: 480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -