Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0329.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   7.9  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    21   7.9  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   7.9  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 302 PVPSHSIWP 328
           P PSHSI+P
Sbjct: 346 PYPSHSIYP 354


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -3

Query: 299 GHNCECRP 276
           GH C+C+P
Sbjct: 51  GHRCQCQP 58


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 417 VCVANVSILNRVFLVEQCFNNS 482
           + VA +SI+  +FLV   FN S
Sbjct: 290 ITVAFISIVTALFLVAINFNKS 311


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 417 VCVANVSILNRVFLVEQCFNNS 482
           + VA +SI+  +FLV   FN S
Sbjct: 290 ITVAFISIVTALFLVAINFNKS 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,518
Number of Sequences: 336
Number of extensions: 2899
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)