Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0329.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 36 0.032
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14... 31 0.92
12_02_1219 + 27096477-27096590,27096704-27097078 29 3.7
09_04_0217 + 15739279-15739365,15739460-15739621,15739726-157397... 29 3.7
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 29 3.7
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 28 4.9
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019... 28 4.9
03_05_0630 + 26260159-26260272,26260520-26260894 28 4.9
12_02_1265 - 27435096-27437675 28 6.5
08_02_1080 - 24197514-24199415 27 8.6
06_02_0355 + 15108541-15108589,15108928-15109301,15109947-15110198 27 8.6
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 7 DNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 180
D+ + + F +V G+++ ++R+ P SH + + G F S A +TY+ A
Sbjct: 65 DDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPTKA 122
>05_01_0021 -
148084-148191,148387-148488,148641-148727,148845-148979,
149109-149324,149772-150043,151346-151394,151521-151526,
151657-151728,152077-152185,152272-152370,153186-153364
Length = 477
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKA-SED 177
L D+ + + F ++ G + ++++ P SH + + G F S A +TY+ ++
Sbjct: 67 LNDDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITYRVPTKA 126
Query: 178 ATDVQYSISSAP 213
A YS P
Sbjct: 127 ALQEAYSTPMFP 138
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 370 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 269
GF +FS + D + NG DGR IT N AQSR
Sbjct: 52 GFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSR 87
>09_04_0217 +
15739279-15739365,15739460-15739621,15739726-15739794,
15740143-15740275,15740873-15741105,15741462-15741526,
15743252-15743327,15744076-15744144,15744233-15744409,
15745349-15745633
Length = 451
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 554 LRQSGNNFFLYTKP*IYLNLLKSMAVIKTL 465
++Q+GNN L KP +YL+++++ A I L
Sbjct: 160 IKQAGNNKDLRPKPHLYLSIMRAFATIGDL 189
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 28.7 bits (61), Expect = 3.7
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Frame = -2
Query: 402 YNKNLTSVPFWVLKASHICSLMSTRGQMEWLGTGGS*LRMPP--NRGYARRISI--IIFE 235
Y K T VP V+ S +S+ G + L GG L P + YA + +
Sbjct: 76 YAKTNTQVPELVVVPSGSRLQLSSNG-LSLLDPGGHELWNPQVTSAAYANMLDTGNFVLA 134
Query: 234 GYDGSLSWST----ADRILDVCGVFA 169
G DGS+ W T AD IL G F+
Sbjct: 135 GADGSIKWGTFESPADTILPTQGPFS 160
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 369 VLKASHIC-SLMSTRGQMEWLGTGGS*LRMPPNRGYARR 256
VL +C +RG+ EWL TG R P +GY R
Sbjct: 183 VLGGQELCVDFQRSRGRAEWLETGSFNGRTGPAKGYGVR 221
>05_04_0181 +
18799445-18799593,18801112-18801163,18801964-18801999,
18802098-18802233,18802313-18802512
Length = 190
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 43 GGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTY 162
GG TA+ + Q + +T + YGY NFS EV +
Sbjct: 150 GGSSTAQHEIGPSQLDEPPPITQPTQDYGYINFSGVEVAH 189
>03_05_0630 + 26260159-26260272,26260520-26260894
Length = 162
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 370 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 269
GF +FS + D + NG DGR IT N AQSR
Sbjct: 52 GFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQSR 87
>12_02_1265 - 27435096-27437675
Length = 859
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 259 ENFYHNL*RLRWLPLLEHC*SNI 191
E +YH L +++W P+ EH N+
Sbjct: 305 EQYYHTLQQMKWGPMTEHVLDNL 327
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 122 STAISTSARRKSHTKPAKTPQTSNIRS 202
S +S S RRKSH+ AK TS I S
Sbjct: 539 SNELSFSGRRKSHSGVAKNKVTSKINS 565
>06_02_0355 + 15108541-15108589,15108928-15109301,15109947-15110198
Length = 224
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +1
Query: 37 VVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDATDVQYSISSAPG 216
+VGG TAE DR+ + R+N+ F+S + KA++D A
Sbjct: 30 MVGGLTTAEFDRL-----LQRQADGRANRVHVGEFTSRSIISKAADDDVGTSKKRKRAVA 84
Query: 217 EGAIVAFKDYDRNSP 261
+G V + +++P
Sbjct: 85 KGGQVQTRRATKDAP 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,486,236
Number of Sequences: 37544
Number of extensions: 300948
Number of successful extensions: 767
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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