Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0329.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25554| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.076
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)                       30   1.2  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         27   8.7  
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                27   8.7  

>SB_25554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 270 LDWAAFAVMTLPSLAIPFGLWY 335
           +DW  F++M++P++ IPF +WY
Sbjct: 1   VDWGLFSLMSIPTMLIPFMVWY 22


>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 523

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 138 VEIAVLIGPDSHYMGYISLRCNPIDFRGQLSAYYSKHVRMEAVVHE 1
           VE+ VL G +  Y G +  + +P D   +++ Y   HV  EA+V E
Sbjct: 54  VELPVLCGGEKVYTGNVKYQVSPFDHSNKIAKY---HVADEALVKE 96


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -2

Query: 246 IIFEGYDGSLSWSTADRILDVCGVFAGFVCDFRRAEVEIAVLIGPDSHYMGYISLRCNPI 67
           I  +GY G+    +   + ++ G++ G +CD RR   +   + G    ++G  +L C+  
Sbjct: 396 ICLDGYTGADCSLSKALVPELFGIYDGGLCDIRRRPCKKTDIFG--DGFIGSENLTCHST 453

Query: 66  DFR 58
           +F+
Sbjct: 454 EFK 456


>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 269 DMRGEFLS*SLKATMAPSPGALLIEYWTSV-ASSLALYVTSAELKLK*P 126
           DMR   L+  L  ++    G L+I    SV AS+ +LY + A++KLK P
Sbjct: 376 DMRPRTLAGKLVGSVCAISGVLMIALPVSVVASNFSLYNSYAKVKLKLP 424


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 318  EWLGTGGS*LRMPPNRGYARRISIIIFEGYDG 223
            +W+G     LR+  ++ YA R SII F+  DG
Sbjct: 962  KWVGESERQLRLLFDQAYAMRPSIIFFDEIDG 993


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +2

Query: 119 ISTAISTSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PS 238
           +S+  +   + ++HT PA+ P  S++ +  +Q R P+ P+
Sbjct: 267 LSSRETPPVQPRNHTCPAEKPHLSSLETPPVQPRNPTSPA 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,919
Number of Sequences: 59808
Number of extensions: 350500
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)