Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0329.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49470.2 68418.m06121 protein kinase family protein contains ... 32 0.33
At5g49470.1 68418.m06122 protein kinase family protein contains ... 32 0.33
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 31 0.58
At1g67890.1 68414.m07752 protein kinase family protein contains ... 31 0.77
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 30 1.0
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 30 1.0
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 30 1.0
At5g14030.1 68418.m01640 translocon-associated protein beta (TRA... 29 1.8
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 2.4
At5g65800.1 68418.m08279 1-aminocyclopropane-1-carboxylate synth... 27 7.2
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu... 27 7.2
At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi... 27 7.2
At1g74240.1 68414.m08598 mitochondrial substrate carrier family ... 27 7.2
At5g02010.1 68418.m00120 expressed protein contains Pfam profile... 27 9.5
At4g21410.1 68417.m03093 protein kinase family protein contains ... 27 9.5
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 9.5
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 27 9.5
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 27 9.5
>At5g49470.2 68418.m06121 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 834
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +2
Query: 152 KSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIEILLAYPRLGGIRSYDPPVPSHSIWPL 331
K+ TKP + + ++V+ + S + M++ L++P G R SHS+WP
Sbjct: 350 KASTKPFRDSSDESDGNSVVPKTLTSKAEEWMVKKGLSWPWKGNEREGLEGRRSHSVWPW 409
Query: 332 VLIKEQI*EAFKTQKGTLVK 391
V ++Q +A+++ VK
Sbjct: 410 VRNEQQKQQAYQSNSNHSVK 429
>At5g49470.1 68418.m06122 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 483
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +2
Query: 152 KSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIEILLAYPRLGGIRSYDPPVPSHSIWPL 331
K+ TKP + + ++V+ + S + M++ L++P G R SHS+WP
Sbjct: 63 KASTKPFRDSSDESDGNSVVPKTLTSKAEEWMVKKGLSWPWKGNEREGLEGRRSHSVWPW 122
Query: 332 VLIKEQI*EAFKTQKGTLVK 391
V ++Q +A+++ VK
Sbjct: 123 VRNEQQKQQAYQSNSNHSVK 142
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1791
Score = 31.1 bits (67), Expect = 0.58
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 107 LSGPISTAI---STSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIEILLAYPRL 277
L+ PI+ A+ STS R T P T T +L EP + + + LL+
Sbjct: 665 LNSPITVALPDKSTSIERSISTVPGFTVSTYEKSPTMLSCAEPQRANSVPVSELLSTTTN 724
Query: 278 GGIRSYDPPVPSHSIW 325
I+ PP+P S W
Sbjct: 725 LSIQKDIPPIPYGSGW 740
>At1g67890.1 68414.m07752 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 765
Score = 30.7 bits (66), Expect = 0.77
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +2
Query: 152 KSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIEILLAYPRLGGIRSYDPPVPSHSIWPL 331
KS +K + N R++V+ ++ S + M++ L++P G R +HS+WP
Sbjct: 350 KSSSKASGESNDENDRNSVVPKKLTSKTEEWMVKKGLSWPWKGNEREGLERRNAHSVWPW 409
Query: 332 VLIKEQI*EAFKTQKGTLVK 391
V ++Q EA + VK
Sbjct: 410 VHNEQQKEEAHHSNSYNSVK 429
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 340 DEYQRPNGMARDGRVITANAAQSR 269
D + NG DGRVIT N AQSR
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 340 DEYQRPNGMARDGRVITANAAQSR 269
D + NG DGRVIT N AQSR
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 340 DEYQRPNGMARDGRVITANAAQSR 269
D + NG DGRVIT N AQSR
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSR 85
>At5g14030.1 68418.m01640 translocon-associated protein beta (TRAPB)
family protein low similarity to SP|P23438
Translocon-associated protein, beta subunit precursor
(TRAP-beta) (Signal sequence receptor beta subunit)
{Canis familiaris}; contains Pfam profile PF05753:
Translocon-associated protein beta (TRAPB)
Length = 195
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYK-ASED 177
L DN + F VV G + +R+ +SH + + + G F + A VT++ ++
Sbjct: 68 LTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFRIPTKP 127
Query: 178 ATDVQYSISSAP 213
A YS P
Sbjct: 128 ALQEAYSTPLLP 139
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 91 VSHVVTVRSNKYGYFNFSSAEVTYKASEDATDV 189
+S +T RS YG+ F A+ +A ED+T +
Sbjct: 49 ISDKLTRRSKGYGFVTFKDAKAATRACEDSTPI 81
>At5g65800.1 68418.m08279 1-aminocyclopropane-1-carboxylate
synthase, putative / ACC synthase, putative similar to
ACC synthases from Arabidopsis thaliana [GI:940370],
Lycopersicon esculentum [GI:508609], Cucumis sativus
[GI:3641649]
Length = 470
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 376 FLGFESFSYLLFDEYQRPNGMARDG 302
FLG+E + +DE + PNGM + G
Sbjct: 20 FLGWEEYEKNPYDEIKNPNGMIQMG 44
>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
N-terminal partial sequence of endo-xyloglucan
transferase GI:2244732 from [Gossypium hirsutum]
Length = 293
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 133 NSRTYWTGQSLHGIH*FEVQSYRFPR 56
NS+ +W G + H + E +SYR+ R
Sbjct: 242 NSKNWWEGSAYHQLSPVEARSYRWVR 267
>At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 687
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 487 DFNRFKYIYGFVYKKKLLPDCRSY 558
D NR I+G++YK L PD SY
Sbjct: 619 DSNRATVIWGYMYKMGLQPDIISY 642
>At1g74240.1 68414.m08598 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 364
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 204 ADRILDVCGVFAGFVCDFRRAEVEIAVLIGPDSHYMGYISLRCNPIDFRGQLSAYYS 34
A + D G F C+ + ++I G S + YIS P+ RG + YY+
Sbjct: 136 AGAVGDTLGSFIYVPCEVIKQRMQIQ---GTSSSWSSYISRNSVPVQPRGDMYGYYT 189
>At5g02010.1 68418.m00120 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 546
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 230 TMAPSPGALLIEYWTSVASSLALYVTSAELKLK 132
T+ PSP I + +SV L YVT E +LK
Sbjct: 479 TVPPSPSRFKIPHSSSVKRVLTAYVTKNEPRLK 511
>At4g21410.1 68417.m03093 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 679
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 16 FHPDVFTVVGGQLTAEIDRIAPQTN--VSHVVTVRSNKYGYFNFSSAE 153
F PD V G TA A N VS + +++S YG++N SS +
Sbjct: 30 FDPDFNCVDRGNFTAN-STFAGNLNRLVSSLSSLKSQAYGFYNLSSGD 76
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 49 QLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 180
++ ++ RI V H+VT S YG+ + + + +A EDA
Sbjct: 82 EVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 340 DEYQRPNGMARDGRVITANAAQSR 269
D + NG DGR IT N AQSR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 340 DEYQRPNGMARDGRVITANAAQSR 269
D + NG DGR IT N AQSR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,263
Number of Sequences: 28952
Number of extensions: 243996
Number of successful extensions: 600
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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