Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0328.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.8  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   2.3  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   2.3  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   2.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   5.4  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.1  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 17  VYYLGNTITFFFFPV 61
           V++LG+ + FF FP+
Sbjct: 236 VFFLGSILIFFIFPL 250


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 152 NLKHYKEYSKSCLVVLNTDILTEMVRNI--EYVFEARHIFP 268
           N+K  K   + C + +N   L E  RN+  + +F  +  FP
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIFNGQAYFP 758


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 288 LLHKPGQGKICLASKTYSIFLTISVRISVFNTTKHDLEYSL 166
           LL K G       S TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNAYARTYS-TYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 288 LLHKPGQGKICLASKTYSIFLTISVRISVFNTTKHDLEYSL 166
           LL K G       S TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNAYARTYS-TYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 288 LLHKPGQGKICLASKTYSIFLTISVRISVFNTTKHDLEYSL 166
           LL K G       S TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNAYARTYS-TYSLFMMANITVAVYGFTSEIVDHGI 276


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -2

Query: 451 SEHXQCQQHRFHLKHVRGKHNH 386
           S H     H +H  HV    NH
Sbjct: 42  SPHLNHAMHPYHANHVNPTANH 63


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -2

Query: 517 WWNEGNQ 497
           WW++GNQ
Sbjct: 403 WWSDGNQ 409


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -2

Query: 517 WWNEGNQ 497
           WW++GNQ
Sbjct: 404 WWSDGNQ 410


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -2

Query: 517 WWNEGNQ 497
           WW++GNQ
Sbjct: 404 WWSDGNQ 410


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,313
Number of Sequences: 336
Number of extensions: 2531
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)