Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0328.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    27   1.4  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   3.2  
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    25   5.6  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.3  

>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 321 VSRSHHSGVNRLLHKPGQGKICLASKTYSIFL 226
           V + H  G+N L   PG   I LASK   I L
Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 209 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 108
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 439 QCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 347
           + Q   FH+ + +GKH   R ++  GR K I
Sbjct: 54  ESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 485 KSGYRQSSTTDKRAXTVP 432
           KSGY + ++T KR+ TVP
Sbjct: 131 KSGYYERTSTRKRSLTVP 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,728
Number of Sequences: 5004
Number of extensions: 42438
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)