Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0328.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 34 0.086
02_03_0367 + 18220099-18220905 30 1.4
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 29 3.2
04_04_0758 - 27826787-27828178 29 3.2
04_04_0757 - 27822139-27823530 29 3.2
07_01_0499 - 3738959-3740068 28 4.3
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167... 28 5.6
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 5.6
05_07_0220 + 28482589-28483752 28 5.6
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 27 7.5
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 27 9.9
06_03_0219 - 18227559-18227858,18227864-18228340 27 9.9
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508... 27 9.9
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 27 9.9
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99... 27 9.9
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 33.9 bits (74), Expect = 0.086
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 485 KSGYRQSSTTDKRAXTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHR 345
K Y + DK T+P AP PPQ PG+A P A ++P Q+ R
Sbjct: 136 KLAYPPTVPIDKAKATLPPAPFPPQ-HPGRADP--AEMMPPTKQIVR 179
>02_03_0367 + 18220099-18220905
Length = 268
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 452 KRAXTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 315
KR P +P+ P+ P Q QP Q A +VH PP +FP
Sbjct: 150 KRRPPPPPSPMSPKVTPAQQQPPQP-----AEKVHDASPPPSSLFP 190
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 439 QCQQHRFHLKHVRGKHNHFRQFFYL 365
Q QQ + +H+R +H+H R +FYL
Sbjct: 168 QQQQQQLKGRHLRPRHSHRRGYFYL 192
>04_04_0758 - 27826787-27828178
Length = 463
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 437 VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 324
V A P P Q Q L +L R + VH PP L
Sbjct: 11 VVAVPFPAQGHLNQLMHLSLLLASRGLDVHYAAPPAHL 48
>04_04_0757 - 27822139-27823530
Length = 463
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 437 VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 324
V A P P Q Q L +L R + VH PP L
Sbjct: 11 VVAVPFPAQGHLNQLMHLSLLLASRGLDVHYAAPPAHL 48
>07_01_0499 - 3738959-3740068
Length = 369
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 320 FPGVIIQA*TDFYTSLVKEKYALLRKHI 237
FPG + + YT K+KYALL+K++
Sbjct: 125 FPGTVHRPSAPAYTLTRKQKYALLKKNV 152
>08_02_1595 -
28114751-28114858,28115018-28115283,28116609-28116703,
28117179-28118154,28118245-28118369,28118443-28118569,
28118606-28118843
Length = 644
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 494 SGHKSGYRQ--SSTTDKRAXTVPAAPIPPQARPGQAQPLQAVLLP 366
S H G ++ SS++ A T A+P PP +P Q Q A LLP
Sbjct: 185 SPHSRGSQEGCSSSSSPSAVTKEASPPPPTPQP-QQQAQSATLLP 228
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 464 STTDKRAXTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 315
ST+ A +P++ PP A P + PLQ + + PPL + P
Sbjct: 315 STSQANAPPIPSSEPPPSALPNNSFPLQPPGGSLSTLSYTGPPPLMNIMP 364
>05_07_0220 + 28482589-28483752
Length = 387
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -1
Query: 440 TVPAAPIPPQARPGQ-----AQPLQAVLLPRAVQVHRT 342
TVPA P PPQ+ P A P + +LP+++ + T
Sbjct: 172 TVPALPPPPQSPPAALMNPVAVPEKQAVLPKSISIRST 209
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 470 QSSTTDKRAXTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 333
QS T + V P PPQ +P Q Q LQ LP+ +Q LPP
Sbjct: 196 QSQQTPQPQPQVHPQPQQPPQLQP-QPQLLQQPQLPQQLQPQSQLPP 241
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 505 GNQDPVTKAATDSHPQPISEHXQ 437
G Q+PV KA D H +P+++ Q
Sbjct: 247 GAQEPVRKAKMDRHKRPVNKELQ 269
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 434 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 327
PAAP PP A P P A+ PR LPP R
Sbjct: 89 PAAPSPPPASPPPPPPRLALRFPRRPP---ELPPRR 121
>04_01_0383 +
5085697-5085724,5085816-5085927,5087249-5087285,
5087512-5087581,5087704-5087808,5088022-5088172,
5088257-5088339,5089152-5089372,5089465-5089501,
5089668-5089753
Length = 309
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 304 FRREQTFTQAWSRKNMPCFE 245
F Q F +WS K +PCFE
Sbjct: 224 FEISQRFEGSWSMKALPCFE 243
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 482 SGYRQSSTTDKRAXTVPA--APIPPQARPGQAQPLQAVLLPRAVQVH 348
S YR+ + A + PA + +P +ARP + A +LP A VH
Sbjct: 9 SSYRRRIVQSRDAVSSPAYWSRLPARARPPAHTRIGAGVLPAATSVH 55
>03_01_0128 +
995103-995174,996500-996606,996909-997041,997127-997270,
997589-997747,997865-997938,998024-998099,998476-998531,
998651-998738,998824-998964,999057-999206,999320-999476,
1001183-1001773,1002673-1003532
Length = 935
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 258 CLASKTYSIFLTISVRISVFNTTKHDLE 175
CLA++ + ++IS + +FN KH E
Sbjct: 710 CLANRPKEVSVSISFALDIFNAQKHAAE 737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,317
Number of Sequences: 37544
Number of extensions: 264937
Number of successful extensions: 809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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