Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0328.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 31 0.82
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5) 29 2.5
SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8) 28 4.4
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5) 28 5.8
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 27 7.6
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2) 27 7.6
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 24 8.4
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 434 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 306
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 464 STTDKRAXTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 333
ST R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 624 STAQPRPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 302 QA*TDFYTSLVKEKYALLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 159
Q+ +Y VKEK H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -1
Query: 440 TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 333
T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
Length = 279
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 493 PVTKAATDSHPQPISEHXQCQQHRFHLKHVRGKHNH 386
P + +++ S P P S Q H H H+ HNH
Sbjct: 111 PPSSSSSQSLPPPPSSSSQPSSHHHHHHHLLHNHNH 146
>SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)
Length = 562
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 199 KHRYSYGDGKEYRICFRSKAYFSLTRLV 282
+H +S GD ++ IC SKAY L R V
Sbjct: 432 EHEFSLGDAEKEFICATSKAYEELIRNV 459
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -1
Query: 434 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKEKYA 255
P PIP QA PGQA P + P VQ + + P FPG + ++ T
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTV 62
Query: 254 LLRKHIRYSLP 222
++ +R +P
Sbjct: 63 NFQQQVRPQVP 73
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Frame = -1
Query: 497 GSGHKSGYRQSSTTDKRAXTVPAAP----IPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 330
G G + ++ T+ TVPA P P P Q QPL P + T PP
Sbjct: 84 GGGWGTAKEKTETSQPATTTVPAPPPSSTTAPVNAPAQQQPLLQPQRPTPPSSYPTQPPS 143
Query: 329 R 327
R
Sbjct: 144 R 144
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -1
Query: 506 RKSGSGHKSGYRQSSTTDKRAXTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTLP 336
+ + S S +S +T + +VP P PP +PG A + + + V+ +
Sbjct: 2297 KDANSSPGSNSTRSPSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPIA 2356
Query: 335 PLRLVFP 315
P RL P
Sbjct: 2357 PTRLALP 2363
>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -1
Query: 497 GSGHKSGYRQSSTTDKRAXTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 336
G G ++ + T ++ PAA P +P P Q+ R + H++LP
Sbjct: 78 GVGASGSFKLNKTVAEKKPKKPAAKKPAAKKPAAKSPQQSPRRSRQRRRHQSLP 131
>SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)
Length = 67
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 RPMYLNRPR*KNCLKW-LCLPRTCLRWNRCCWHCXCSL 452
R Y+ + K L + +CL T LR +R C HC C +
Sbjct: 22 RQRYVTHDKRKALLSFTVCLCSTHLRSDRLCVHCPCRI 59
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -1
Query: 437 VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 333
+P AP+ P P P +A+ P LPP
Sbjct: 220 IPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
Length = 531
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 306 HSGVNRLLHKPGQGKICLASKTY 238
H G+NR K +G +C+A KTY
Sbjct: 18 HYGMNRHERKSVRGDLCVAKKTY 40
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 23.8 bits (49), Expect(2) = 8.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 333 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 431
W Y N + +C K C+ C WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335
Score = 21.8 bits (44), Expect(2) = 8.4
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +3
Query: 408 CLRWNRCCW 434
C WN+CC+
Sbjct: 346 CPSWNKCCY 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,761
Number of Sequences: 59808
Number of extensions: 310953
Number of successful extensions: 764
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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