Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0328.Seq
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK075506-1|BAC11659.1|  142|Homo sapiens protein ( Homo sapiens ...    30   6.1  
BC036197-1|AAH36197.1|  196|Homo sapiens MGC39545 protein protein.     29   8.1  
AL132655-8|CAM28316.1|  625|Homo sapiens GNAS complex locus prot...    29   8.1  
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat...    29   8.1  

>AK075506-1|BAC11659.1|  142|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0204 fis, clone HEMBA1002706. ).
          Length = 142

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 482 SGYRQSSTTDKRAXTVPAAPIPPQARPGQAQPLQAVLL 369
           SG+R+   T+KRA ++P  P PP      +Q  + V++
Sbjct: 49  SGWRRVKETEKRAPSLPPPPFPPDPIQVLSQKCRYVIM 86


>BC036197-1|AAH36197.1|  196|Homo sapiens MGC39545 protein protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 512 E*RKSGSGHKSGYRQSSTTDKRAXTVPAAPI-PPQARPGQAQPLQAVLLP 366
           E R    G ++G   SST    A  +P     P  ARP  AQP +++L P
Sbjct: 6   ERRDRQKGRRAGCDTSSTPSNTAPRIPEPGAHPTAARPATAQPPRSLLPP 55


>AL132655-8|CAM28316.1|  625|Homo sapiens GNAS complex locus
           protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = -1

Query: 437 VPAAPIPPQARPGQAQPLQAV---LLPRAVQVH----RTLPPLRLVFPG 312
           +P  PIP   RP   QP+      L P+ +Q+     R  PPLRL+ PG
Sbjct: 372 LPPQPIPTPGRPLTPQPIPTPGRPLTPQPIQMPGRPLRLPPPLRLLRPG 420


>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
            SRCAP protein.
          Length = 2971

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 467  SSTTDKRAXTVPAAPIPPQARPGQAQPLQAVL 372
            +S T   A  VPAAP PP  +P  A P  + L
Sbjct: 1215 TSVTPPLAPVVPAAPGPPSLQPSGASPSASAL 1246


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,429,386
Number of Sequences: 237096
Number of extensions: 1434156
Number of successful extensions: 4251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4228
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)