Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0328.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    28   3.9  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81106-5|CAB03223.3|  432|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL033536-12|CAD45609.2|  432|Caenorhabditis elegans Hypothetical...    28   5.1  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 378 CLKWLCLPRTCLRWNRCCWHCXCSLIGCG 464
           C +  C  R C     CC  C C   GCG
Sbjct: 103 CCRTCCCTRCCTCCRPCCCGCGCGCCGCG 131


>Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical
           protein C44H9.6 protein.
          Length = 610

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +3

Query: 333 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCXCS 449
           W+KRP Y  R R ++  K   LP +     + C    W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -2

Query: 391 NHFRQFFYLGRFK--YIGR--FLHFV*CFQESSFRREQTFTQAWSRKNMPCFENIFD 233
           + F++ F+LG  +  Y+ R   LHF    + S F+   T+  A     +PC++++ +
Sbjct: 615 DRFKEDFHLGHIQSSYLMRNGSLHFAVHEETSPFKPNTTYQMAQGTSYLPCYKHVLE 671


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 14  YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 106
           ++  + N ITFF  PV   G  C+L K  +R
Sbjct: 15  FLISISNVITFFEIPVCTFGAYCILFKTPER 45


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 378 CLKWLCLPRTCLRWNRCCWHCXCSLIGCG 464
           C +  C  R C     CC  C C   GCG
Sbjct: 103 CCRTCCCTRCCTCCRPCCCGCGCG-CGCG 130


>Z81106-5|CAB03223.3|  432|Caenorhabditis elegans Hypothetical
           protein R06C1.6 protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 514 WNEGNQDPVTKAATDSHPQPISEHXQCQQHRFHLKHVRGKHN 389
           +  G  + +  A   S P P+++  Q QQH   L H+ G H+
Sbjct: 32  FGRGISNDLPTAYVTSTPLPLAKAQQQQQHEQQLHHLPGYHS 73


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 378 CLKWLCLPRTCLRWNRCCWHCXCSLIGCG 464
           C +  C  R C     CC  C C   GCG
Sbjct: 85  CCRTCCCTRCCTCCRPCCCGCGCG-CGCG 112


>AL033536-12|CAD45609.2|  432|Caenorhabditis elegans Hypothetical
           protein R06C1.6 protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 514 WNEGNQDPVTKAATDSHPQPISEHXQCQQHRFHLKHVRGKHN 389
           +  G  + +  A   S P P+++  Q QQH   L H+ G H+
Sbjct: 32  FGRGISNDLPTAYVTSTPLPLAKAQQQQQHEQQLHHLPGYHS 73


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 485 KSGYRQSSTTDKRAXTVPAAPIPPQARPGQAQPLQAVLLPRAV 357
           + G   SS T +    VP  P PP   P  A   ++  LPR+V
Sbjct: 343 EEGRNSSSMTPQPQSLVPPPPPPPPPPPSAASNGRSGYLPRSV 385


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +3

Query: 378 CLKWLCLPRTCLRWNRCCWHCXCSLIGCG 464
           C +  C  R C     CC  C C    CG
Sbjct: 101 CCRTCCCTRCCTCCRPCCCGCGCGCGCCG 129


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +3

Query: 378 CLKWLCLPRTCLRWNRCCWHCXCSLIGCG 464
           C +  C  R C     CC  C C    CG
Sbjct: 87  CCRTCCCTRCCTCCRPCCCGCGCGCGCCG 115


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +3

Query: 378 CLKWLCLPRTCLRWNRCCWHCXCSLIGCG 464
           C +  C  R C     CC  C C    CG
Sbjct: 90  CCRTCCCTRCCTCCRPCCCGCGCGCGCCG 118


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +3

Query: 378 CLKWLCLPRTCLRWNRCCWHCXCSLIGCG 464
           C +  C  R C     CC  C C    CG
Sbjct: 102 CCRTCCCTRCCTCCRPCCCGCGCGCGCCG 130


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +3

Query: 378 CLKWLCLPRTCLRWNRCCWHCXCSLIGCG 464
           C +  C  R C     CC  C C    CG
Sbjct: 102 CCRTCCCTRCCTCCRPCCCGCGCGCGCCG 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,919,155
Number of Sequences: 27780
Number of extensions: 238517
Number of successful extensions: 636
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)