Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0328.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi...    31   0.67 
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi...    31   0.67 
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi...    29   2.0  
At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    28   4.7  
At1g32190.1 68414.m03959 expressed protein                             27   6.2  
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /...    27   8.3  

>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform II GI:1914685 from [Daucus carota];
           contains Pfam profiles PF00240: Ubiquitin family,
           PF00627: UBA/TS-N domain
          Length = 351

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = -1

Query: 539 VIXNGFLVVE*RKSGSGHKSGYRQSSTTD-------KRAXTVPAAPIPPQARPGQAQPLQ 381
           V   GFLVV   KS SG  +G     T+          + T PAAP   Q+ P  A P+ 
Sbjct: 64  VTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPASPIP 123

Query: 380 AVLLPRA 360
           A   P A
Sbjct: 124 AQEQPAA 130


>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform II GI:1914685 from [Daucus carota];
           contains Pfam profiles PF00240: Ubiquitin family,
           PF00627: UBA/TS-N domain
          Length = 371

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = -1

Query: 539 VIXNGFLVVE*RKSGSGHKSGYRQSSTTD-------KRAXTVPAAPIPPQARPGQAQPLQ 381
           V   GFLVV   KS SG  +G     T+          + T PAAP   Q+ P  A P+ 
Sbjct: 64  VTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPASPIP 123

Query: 380 AVLLPRA 360
           A   P A
Sbjct: 124 AQEQPAA 130


>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform II GI:1914685 from [Daucus carota];
           contains Pfam profiles PF00240: Ubiquitin family,
           PF00627: UBA/TS-N domain
          Length = 365

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
 Frame = -1

Query: 539 VIXNGFLVVE*RKSGSGHKSGYRQ--------SSTTDKRAXTVPAAPIPPQARPGQAQP 387
           V   GFLVV   KS SG  +G           SST      T  ++P+P    P Q QP
Sbjct: 64  VTEEGFLVVMLSKSKSGGSAGQASVQPVSATTSSTKPAAPSTTQSSPVPASPIPAQEQP 122


>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 466 HPQPISEHXQCQQHRFHLKHVRGKHNHFRQFF 371
           HP P   H Q QQH  H  H + +  H + +F
Sbjct: 148 HPHP--HHQQQQQHNHHHHHHQQQQQHQQMYF 177


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 360 RPR*KNCLKWLCL--PRT-CLRWNRCCWHCXCSLIGCG 464
           +P+   C  W CL  P T C R + CC  C   L  CG
Sbjct: 365 KPKCPKCSCWKCLKCPDTECCRSSCCCSGCFSWLCCCG 402


>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 783

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 152 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEARHIFP 268
           +L+HY+       +VL++D L + + N+E V  A   FP
Sbjct: 683 SLRHYRLTENDQFMVLSSDGLYQYLSNVEVVSLAMEKFP 721


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,035,355
Number of Sequences: 28952
Number of extensions: 216057
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)