Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0327.Seq
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 51 8e-08
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 50 1e-07
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 2.1
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 2.7
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 26 2.7
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 4.8
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 6.3
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 6.3
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 6.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.3
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 24 8.4
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 24 8.4
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 24 8.4
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 24 8.4
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 50.8 bits (116), Expect = 8e-08
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +3
Query: 111 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 254
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIR 60
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 257 SKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKA 367
S+DKRA K K+RLGT RAK K EEL++V+ R A
Sbjct: 62 SQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 50.4 bits (115), Expect = 1e-07
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +3
Query: 111 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 254
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIR 60
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 257 SKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKA 367
S+DKRA K K+RLGT RAK K EEL++V+ R A
Sbjct: 62 SQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 2.1
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 197 STRSCRTRSI*EEGYGVT*VSKDKRALKFLKRRLGTHIRAKRKR 328
+TR+C T+S+ EEG+ VS + + +FL L I+ K K+
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKR-RFLTDLLKARIKDKVKQ 970
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 2.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 310 PRQEEA*RT*QRARSDEEGSRQAHHHHH 393
P Q+ A ++ + + + GS HHHHH
Sbjct: 720 PGQQNANQS-EEKQGGQNGSNGGHHHHH 746
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 2.7
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 254 VSKDKRALKFLKRRLGTHIRAKR--KREELSNVLAQMRKAAARLITITIK 397
V+++ +ALK R + + KRE+ SNV +M++ AARL+ I K
Sbjct: 49 VAEEVQALKAKDRNFKPALAIVQVGKRED-SNVYVRMKEKAARLVGIDFK 97
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 141 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 245
RPA L+ L+T SKFV + V Y K ++
Sbjct: 27 RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 6.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 340 AKFFTLPLGADVCAQSSLQELQSTLV 263
A+FFT PL ++VCA + + + ++
Sbjct: 560 AQFFTSPLVSNVCAYADVNHAKPVVI 585
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.6 bits (51), Expect = 6.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 119 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 30
D A + S F AFSQ Y + +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 24.6 bits (51), Expect = 6.3
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +2
Query: 287 KRRLGTHIRAKRKREELSNVLAQM 358
K+RL +I K K+EE+++++A++
Sbjct: 89 KKRLDKYIENKLKKEEVASLIAKL 112
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 6.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 162 LQTKHSKFVRDLVREVVGHAQYEKRAMELLKCQKTS 269
+Q HSKF +L +EV+ Y + + C S
Sbjct: 1038 IQGNHSKFTTNLQKEVIISPHYFAHCLSEVVCNDNS 1073
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 24.2 bits (50), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 296 LGTHIRAKRKREELSNVLAQMRKAAARLITI 388
+G IRA+RK + ++RK AA+L T+
Sbjct: 1 MGRVIRAQRKSGGIFQAHTRLRKGAAQLRTL 31
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 24.2 bits (50), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 296 LGTHIRAKRKREELSNVLAQMRKAAARLITI 388
+G IRA+RK + ++RK AA+L T+
Sbjct: 1 MGRVIRAQRKSGGIFQAHTRLRKGAAQLRTL 31
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 24.2 bits (50), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 296 LGTHIRAKRKREELSNVLAQMRKAAARLITI 388
+G IRA+RK + ++RK AA+L T+
Sbjct: 1 MGRVIRAQRKSGGIFQAHTRLRKGAAQLRTL 31
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 24.2 bits (50), Expect = 8.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 352 SDEEGSRQAHHHHH 393
SD++ + HHHHH
Sbjct: 290 SDKDLHHEGHHHHH 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,593
Number of Sequences: 5004
Number of extensions: 27176
Number of successful extensions: 78
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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