Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0327.Seq
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 55 3e-08
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 55 3e-08
07_03_0078 - 13147741-13148913 30 0.66
12_02_1029 - 25521641-25521852,25521978-25522035,25522142-255221... 28 2.7
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695... 28 2.7
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 28 2.7
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 28 3.5
11_02_0038 - 7631462-7634428,7635975-7636250 27 4.6
10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874 27 4.6
03_04_0035 - 16685674-16686376,16686594-16686640 27 4.6
05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713... 24 5.4
11_01_0593 - 4705565-4705822,4705916-4706065,4706160-4706307,470... 27 8.1
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 8.1
03_05_0301 + 22928864-22929787 27 8.1
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 54.8 bits (126), Expect = 3e-08
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +2
Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAARLIT 385
V KDKRALK KR+LGTH RAK+KREE++ VL +MR T
Sbjct: 66 VGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMRSGGGHAHT 109
Score = 53.6 bits (123), Expect = 6e-08
Identities = 32/73 (43%), Positives = 40/73 (54%)
Frame = +3
Query: 45 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 224
P+ + VG+ KGH TK + + RP+ KG TK FVR+L+REV G A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55
Query: 225 YEKRAMELLKCQK 263
YEKR ELLK K
Sbjct: 56 YEKRITELLKVGK 68
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 54.8 bits (126), Expect = 3e-08
Identities = 33/73 (45%), Positives = 40/73 (54%)
Frame = +3
Query: 45 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 224
P+ + VG+ KGH TK + + RP+ KG TK FVR L+REVVG A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55
Query: 225 YEKRAMELLKCQK 263
YEKR ELLK K
Sbjct: 56 YEKRITELLKVGK 68
Score = 53.6 bits (123), Expect = 6e-08
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +2
Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 361
V KDKRALK KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 66 VGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101
>07_03_0078 - 13147741-13148913
Length = 390
Score = 30.3 bits (65), Expect = 0.66
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 148 AGLILMALSVIPLRPADILVVLWPF 74
AGL+ AL VIP P + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>12_02_1029 -
25521641-25521852,25521978-25522035,25522142-25522191,
25522280-25522585,25522666-25523068,25524573-25524624,
25525523-25525572,25526151-25526306,25526987-25527286
Length = 528
Score = 28.3 bits (60), Expect = 2.7
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 12 FLRICQSEIMAPRFEIAVGLRKG--H-KTTKISAGRKGITDKAIRIRPARLKGLQTKHSK 182
FL IC E++A E+ RKG H K + R G+ ++++ + G TK K
Sbjct: 401 FLTICSQELLARGTELLKRTRKGALHWKVVSVYIHRTGVV--MLKMKSRHVAGTLTKKKK 458
Query: 183 -FVRDLVREV 209
V D+ R+V
Sbjct: 459 NVVVDVCRDV 468
>10_03_0007 -
6956215-6956223,6957082-6957300,6957874-6957978,
6958062-6958175,6958342-6958467,6958583-6958697,
6958791-6958867,6958956-6959179,6959848-6959953,
6960065-6960163,6960282-6960467,6960611-6960613
Length = 460
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 313 RQEEA*RT*QRARSDEEGSRQAHHHHH 393
R+E A R +R ++G Q HHHHH
Sbjct: 6 RREAAAR--RRREQQQQGREQRHHHHH 30
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 379 EPGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQ 275
EPG C HVA+F P A+S +EL+
Sbjct: 790 EPGACDQSFGIHVAEFANFPEAVVALAKSKAEELE 824
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 319 EEA*RT*QRARSDEEGSRQAHHHHH 393
E+ R +R + D++ S+ HHHHH
Sbjct: 236 EKKDRKERRKKKDKKKSKHRHHHHH 260
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 263 DKRALKFLKRRLGTHIRAKRKREELSNV 346
DK+ LKFL R TH + E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874
Length = 118
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 340 QRARSDEEGSRQAHHHHH 393
Q D+EG Q HHHH
Sbjct: 28 QELMEDDEGDEQEEHHHH 45
>03_04_0035 - 16685674-16686376,16686594-16686640
Length = 249
Score = 27.5 bits (58), Expect = 4.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 346 ARSDEEGSRQAHHHHH 393
A D++G HHHHH
Sbjct: 231 AEEDDDGDHHHHHHHH 246
>05_01_0012 -
70296-70398,70494-70648,70737-70843,71138-71216,
71343-71423,71556-72581
Length = 516
Score = 24.2 bits (50), Expect(2) = 5.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 346 ARSDEEGSRQAHHHHH 393
A +E +R HHHHH
Sbjct: 263 ALREEMAARNHHHHHH 278
Score = 21.4 bits (43), Expect(2) = 5.4
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +1
Query: 379 HHHHH*VINKLI 414
HHHHH +++ L+
Sbjct: 278 HHHHHDLLSVLM 289
>11_01_0593 -
4705565-4705822,4705916-4706065,4706160-4706307,
4706400-4706479,4706573-4706739,4706830-4707078,
4707161-4707733,4707833-4707972,4708064-4708185,
4708622-4708743,4708877-4709105
Length = 745
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 418 RKLVYLSLNGDGDEPGGCLPHLSEHVAKFFTLPLGAD 308
R V LS DGDEP LP + ++ + L D
Sbjct: 676 RSEVGLSYESDGDEPVVTLPENNRNIQSYINLAFDVD 712
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 12 FLRICQSEIMAPRFEIAVGLRKG--H-KTTKISAGRKGITDKAIRIRPARLKGLQTKHSK 182
FL IC E++A E+ RKG H K + R G+ ++++ + G TK K
Sbjct: 348 FLGICSQELLARGTELLKRTRKGALHWKVVSVYINRMGLV--MLKMKSRHVAGTITKKKK 405
Query: 183 -FVRDLVREV 209
V D+ ++V
Sbjct: 406 SVVIDVCKDV 415
>03_05_0301 + 22928864-22929787
Length = 307
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 352 SDEEGSRQAHHHHH 393
S +E S+Q HHHHH
Sbjct: 274 SHDEVSQQQHHHHH 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,507,296
Number of Sequences: 37544
Number of extensions: 188841
Number of successful extensions: 695
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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