Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0327.Seq
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 64 3e-11
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 1.9
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 28 2.7
SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_41918| Best HMM Match : DUF834 (HMM E-Value=2.3) 28 3.6
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 27 6.3
SB_53444| Best HMM Match : DUF40 (HMM E-Value=6.7) 27 8.3
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 64.5 bits (150), Expect = 3e-11
Identities = 36/69 (52%), Positives = 43/69 (62%)
Frame = +3
Query: 57 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 236
+AVGL+KGHK TK + +P+R KG K KFVRD+VREVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 237 AMELLKCQK 263
MELL+ K
Sbjct: 51 VMELLRIGK 59
Score = 62.5 bits (145), Expect = 1e-10
Identities = 27/37 (72%), Positives = 33/37 (89%)
Frame = +2
Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 364
+ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 57 IGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93
>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -3
Query: 170 RLKTL*SSWPNS----DGFVCDTLAASGYFSCFVAFSQAYCDFKTRSHDFGLTDPK 15
RLK++ SW N+ G CD A+G F V FS + K R H D K
Sbjct: 440 RLKSMRWSWENARTSKGGQSCDDPDATGDFEDEVTFSDPHLQKKFRRHSLKTLDTK 495
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 25.4 bits (53), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 379 HHHHH*VINKLIYV 420
HHHHH +IN ++ +
Sbjct: 292 HHHHHHIINIIVII 305
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = +1
Query: 358 EEGSRQAHHHHH 393
+ Q HHHHH
Sbjct: 266 QHNHHQHHHHHH 277
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +2
Query: 257 SKDKRALKFLKRRLGTHIRAKRKREELSN 343
+K RALKFLK RL +R KR E L N
Sbjct: 59 NKSPRALKFLKTRL-QDLRKKRDSETLRN 86
>SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 310 PRQEEA*RT*-QRARSDEEGSRQAHHHH 390
P+Q E R+ R+R++ +G ++ HHHH
Sbjct: 340 PQQPEKQRSETNRSRTESKGKKEKHHHH 367
>SB_41918| Best HMM Match : DUF834 (HMM E-Value=2.3)
Length = 110
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 310 PRQEEA*RT*-QRARSDEEGSRQAHHHH 390
P+Q E R+ R+R++ +G ++ HHHH
Sbjct: 18 PQQPEKQRSETNRSRTESKGKKEKHHHH 45
>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1090
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 310 PRQEEA*RT*-QRARSDEEGSRQAHHHH 390
P+Q E R+ R+R++ +G ++ HHHH
Sbjct: 204 PQQPEKQRSETNRSRTESKGKKEKHHHH 231
>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 379 EPGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQS 272
+PG LP LSE+ K +T L V Q ++ LQS
Sbjct: 137 QPGSVLPELSEYHGKLYTSMLHDQVSVQHAM-SLQS 171
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 27.1 bits (57), Expect = 6.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 370 RQAHHHHH*VINKLIYV 420
+Q HHHHH +IN ++ +
Sbjct: 69 QQHHHHHHHIINIIVII 85
>SB_53444| Best HMM Match : DUF40 (HMM E-Value=6.7)
Length = 206
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 340 QRARSDEEGSRQAHHHHH 393
Q S G+R+ HHHHH
Sbjct: 131 QHTSSSFTGNRREHHHHH 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,127,726
Number of Sequences: 59808
Number of extensions: 225998
Number of successful extensions: 718
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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