Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0327.Seq
         (421 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.                76   4e-14
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...    76   4e-14
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...    76   4e-14
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...    76   4e-14
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...    76   4e-14
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    60   3e-09
U93871-1|AAB68767.1|  400|Homo sapiens RaP2 interacting protein ...    29   4.8  
CR456748-1|CAG33029.1|  405|Homo sapiens RPIP8 protein.                29   4.8  
BX537443-1|CAD97685.1|  400|Homo sapiens hypothetical protein pr...    29   4.8  
BC006194-1|AAH06194.1|  405|Homo sapiens RaP2 interacting protei...    29   4.8  
AF055026-1|AAC09366.1|  405|Homo sapiens RaP2 interacting protei...    29   4.8  
AB209802-1|BAD93039.1|  481|Homo sapiens RaP2 interacting protei...    29   4.8  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = +2

Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAR 376
           VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 63  VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103



 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 39/75 (52%), Positives = 48/75 (64%)
 Frame = +3

Query: 39  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 218
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 219 AQYEKRAMELLKCQK 263
           A YE+RAMELLK  K
Sbjct: 51  APYERRAMELLKVSK 65


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = +2

Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAR 376
           VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 63  VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103



 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 39/75 (52%), Positives = 48/75 (64%)
 Frame = +3

Query: 39  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 218
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 219 AQYEKRAMELLKCQK 263
           A YE+RAMELLK  K
Sbjct: 51  APYERRAMELLKVSK 65


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = +2

Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAR 376
           VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 63  VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103



 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 39/75 (52%), Positives = 48/75 (64%)
 Frame = +3

Query: 39  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 218
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 219 AQYEKRAMELLKCQK 263
           A YE+RAMELLK  K
Sbjct: 51  APYERRAMELLKVSK 65


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = +2

Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAR 376
           VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 63  VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103



 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 39/75 (52%), Positives = 48/75 (64%)
 Frame = +3

Query: 39  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 218
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 219 AQYEKRAMELLKCQK 263
           A YE+RAMELLK  K
Sbjct: 51  APYERRAMELLKVSK 65


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = +2

Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAR 376
           VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 63  VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103



 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 39/75 (52%), Positives = 48/75 (64%)
 Frame = +3

Query: 39  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 218
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 219 AQYEKRAMELLKCQK 263
           A YE+RAMELLK  K
Sbjct: 51  APYERRAMELLKVSK 65


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 27/30 (90%), Positives = 30/30 (100%)
 Frame = +2

Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSN 343
           VSKDKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 3   VSKDKRALKFIKKRVGTHIRAKRKREELSN 32


>U93871-1|AAB68767.1|  400|Homo sapiens RaP2 interacting protein 8
           protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 93  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 245
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303


>CR456748-1|CAG33029.1|  405|Homo sapiens RPIP8 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 93  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 245
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308


>BX537443-1|CAD97685.1|  400|Homo sapiens hypothetical protein
           protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 93  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 245
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303


>BC006194-1|AAH06194.1|  405|Homo sapiens RaP2 interacting protein 8
           protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 93  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 245
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308


>AF055026-1|AAC09366.1|  405|Homo sapiens RaP2 interacting protein 8
           protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 93  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 245
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308


>AB209802-1|BAD93039.1|  481|Homo sapiens RaP2 interacting protein 8
           variant protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 93  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 245
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,379,958
Number of Sequences: 237096
Number of extensions: 945182
Number of successful extensions: 2566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2494
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)