Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0327.Seq
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    62   2e-10
AF154004-1|AAD38186.1|  330|Caenorhabditis elegans cyclin-depend...    29   1.8  
AC024766-2|AAK68887.2|  330|Caenorhabditis elegans Cyclin-depend...    29   1.8  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    27   5.5  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    27   5.5  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    27   5.5  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      27   5.5  
U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +2

Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKA 367
           +SKDKRALKFLKRR+GTH RAK KREEL NV+   RKA
Sbjct: 65  ISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 102



 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 28/69 (40%), Positives = 42/69 (60%)
 Frame = +3

Query: 57  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 236
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 237 AMELLKCQK 263
            +E+L+  K
Sbjct: 59  VLEMLRISK 67


>AF154004-1|AAD38186.1|  330|Caenorhabditis elegans cyclin-dependent
           kinase 7 homolog protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 214 DTLNMRRGLWSYLSVKRQACSEVLEATIGHTHP 312
           D L++  G+W++  +KR  C++ L+     T P
Sbjct: 261 DLLDLMAGMWTFDPIKRLTCTQSLQMEYFRTQP 293


>AC024766-2|AAK68887.2|  330|Caenorhabditis elegans Cyclin-dependent
           kinase familyprotein 7 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 214 DTLNMRRGLWSYLSVKRQACSEVLEATIGHTHP 312
           D L++  G+W++  +KR  C++ L+     T P
Sbjct: 261 DLLDLMAGMWTFDPIKRLTCTQSLQMEYFRTQP 293


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 26  SVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 199
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 27   QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 194
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 195  LVREVVGHAQYE 230
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 27   QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 194
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 195  LVREVVGHAQYE 230
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 26  SVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 199
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


>U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical
           protein C52E12.6 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 260 KDKRALKF-LKRRLGTHIRAKRKREELSNVLAQM--RKAAARL 379
           K+ R +KF   R L  H+R + K +ELS  +  M  R+ +A++
Sbjct: 207 KECRGIKFRFNRELNEHVRLQHKSKELSCCVCNMVFRQLSAKI 249


>U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical
           protein B0218.1b protein.
          Length = 507

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 308 IRAKRKREELSNVLAQMRKAAARLIT 385
           I A+R+R++LS  + Q RKAA +L T
Sbjct: 32  IVAQRRRDDLSKNVEQARKAADKLDT 57


>U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical
           protein B0218.1a protein.
          Length = 572

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 308 IRAKRKREELSNVLAQMRKAAARLIT 385
           I A+R+R++LS  + Q RKAA +L T
Sbjct: 32  IVAQRRRDDLSKNVEQARKAADKLDT 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,749,292
Number of Sequences: 27780
Number of extensions: 156205
Number of successful extensions: 525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)