Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0327.Seq
(421 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 59 1e-09
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 57 4e-09
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 57 4e-09
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 49 1e-06
At1g34590.1 68414.m04299 hypothetical protein 29 0.97
At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger) fa... 28 3.0
At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger) fa... 28 3.0
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 25 3.5
At5g28430.1 68418.m03453 hypothetical protein 27 5.2
At4g06603.1 68417.m01028 expressed protein 27 5.2
At3g60930.1 68416.m06816 expressed protein 27 5.2
At5g05440.1 68418.m00586 expressed protein low similarity to cyt... 26 9.0
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 58.8 bits (136), Expect = 1e-09
Identities = 28/40 (70%), Positives = 32/40 (80%)
Frame = +2
Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAA 373
V KDKRALK KR+LGTH RAKRKREE+S+VL +MR A
Sbjct: 62 VGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGA 101
Score = 47.2 bits (107), Expect = 5e-06
Identities = 29/67 (43%), Positives = 36/67 (53%)
Frame = +3
Query: 63 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 242
VGL KGH TK + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 8 VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57
Query: 243 ELLKCQK 263
ELLK K
Sbjct: 58 ELLKVGK 64
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 57.2 bits (132), Expect = 4e-09
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 361
V KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 66 VGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
Score = 48.4 bits (110), Expect = 2e-06
Identities = 28/67 (41%), Positives = 37/67 (55%)
Frame = +3
Query: 63 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 242
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 243 ELLKCQK 263
ELLK K
Sbjct: 62 ELLKVGK 68
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 57.2 bits (132), Expect = 4e-09
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 254 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 361
V KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 66 VGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
Score = 47.6 bits (108), Expect = 3e-06
Identities = 29/67 (43%), Positives = 36/67 (53%)
Frame = +3
Query: 63 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 242
VGL KGH T+ + + RP KG +K + F+R L+REV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61
Query: 243 ELLKCQK 263
ELLK K
Sbjct: 62 ELLKVGK 68
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 48.8 bits (111), Expect = 1e-06
Identities = 28/67 (41%), Positives = 37/67 (55%)
Frame = +3
Query: 63 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 242
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 243 ELLKCQK 263
ELLK K
Sbjct: 62 ELLKVAK 68
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +2
Query: 275 LKFLKRRLGTHIRAKRKREELSNVLAQMR 361
LK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 64 LKVAKRKLGTHKRAKRKREEMSSVLRKMR 92
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 29.5 bits (63), Expect = 0.97
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 12 FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 152
F+ + ++ AP E A GH++ + A + G+TD+A + PA+
Sbjct: 765 FIAELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811
>At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 411
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2
Query: 396 LMVMVMSLAAAFLI*ASTLLSSSRFLLARMCVPNRRFKNFRAR 268
L+ MV+ LAAAFL + L S RFL RRF+ +R R
Sbjct: 42 LIAMVVVLAAAFLFVTYSRLISRRFLSPLF----RRFRRWRCR 80
>At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 411
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2
Query: 396 LMVMVMSLAAAFLI*ASTLLSSSRFLLARMCVPNRRFKNFRAR 268
L+ MV+ LAAAFL + L S RFL RRF+ +R R
Sbjct: 42 LIAMVVVLAAAFLFVTYSRLISRRFLSPLF----RRFRRWRCR 80
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 24.6 bits (51), Expect(2) = 3.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 355 DEEGSRQAHHHHH 393
D + ++ AHHHHH
Sbjct: 549 DHQMNQSAHHHHH 561
Score = 21.4 bits (43), Expect(2) = 3.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 379 HHHHH*VIN 405
HHHHH IN
Sbjct: 558 HHHHHQHIN 566
>At5g28430.1 68418.m03453 hypothetical protein
Length = 486
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 12 FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 152
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 431 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477
>At4g06603.1 68417.m01028 expressed protein
Length = 786
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 12 FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 152
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 731 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777
>At3g60930.1 68416.m06816 expressed protein
Length = 798
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 12 FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 152
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 743 FMSELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789
>At5g05440.1 68418.m00586 expressed protein low similarity to
cytokinin-specific binding protein [Vigna radiata]
GI:4190976
Length = 203
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 358 HLSEHVAKFFTLPLGADVCAQSSLQELQS 272
H+ EHVA T +G D C S +Q + +
Sbjct: 40 HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,352,900
Number of Sequences: 28952
Number of extensions: 150037
Number of successful extensions: 523
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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