Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0325.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    42   0.006
UniRef50_A1FRZ4 Cluster: VirB8 precursor; n=2; Xanthomonadaceae|...    32   5.0  
UniRef50_Q0UG02 Cluster: Predicted protein; n=1; Phaeosphaeria n...    32   5.0  
UniRef50_Q6C385 Cluster: Yarrowia lipolytica chromosome F of str...    32   6.6  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 41.9 bits (94), Expect = 0.006
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = -3

Query: 252  LCFEXXFDIPYHLRKNIGV 196
            LCFE  FDIPYHLRKNIGV
Sbjct: 1168 LCFENIFDIPYHLRKNIGV 1186


>UniRef50_A1FRZ4 Cluster: VirB8 precursor; n=2;
           Xanthomonadaceae|Rep: VirB8 precursor - Stenotrophomonas
           maltophilia R551-3
          Length = 351

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 434 VPAAPIPPQARPGQAQPLQAVLLP 363
           +PA P+P QA PGQA P Q  + P
Sbjct: 313 MPAQPVPGQATPGQAMPGQPAMRP 336


>UniRef50_Q0UG02 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 402

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 443 APTVPAAPIPPQARPGQAQPLQAVLLP 363
           AP VP AP+ P ARP    P+ A++ P
Sbjct: 49  APIVPPAPVAPVARPAPVAPIIAIVPP 75


>UniRef50_Q6C385 Cluster: Yarrowia lipolytica chromosome F of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome F of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 1275

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 442 HRQCQQHRFHLKHVRGKHNHFRQFFYLGRVQVHRTLPPLRLVFPGV 305
           H+  Q H+ H  H +G+H H  Q    G+   H +L P+    PG+
Sbjct: 636 HQNSQPHQLH--HTQGQHPHHLQKHLPGQAPGHSSLGPMPSYAPGM 679


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,426,931
Number of Sequences: 1657284
Number of extensions: 5283262
Number of successful extensions: 14030
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13974
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)