Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0325.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722     31   0.57 
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    28   4.0  
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293...    27   5.3  
04_04_0146 + 23106325-23108154                                         27   7.0  
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179           27   7.0  
01_03_0281 - 14570635-14574633                                         27   9.2  

>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
          Length = 740

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 439 RQCQQHRFHLKHVRGKHNHFRQFFYL 362
           RQ QQ +   +H+R +H+H R +FYL
Sbjct: 167 RQQQQQQLKGRHLRPRHSHRRGYFYL 192


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1

Query: 443 APTVPAAPIPPQARPGQAQPLQAVLLP 363
           AP  PAAP    ARP   QP  AV  P
Sbjct: 80  APPPPAAPAVTPARPPPQQPAVAVAAP 106


>04_04_1104 -
           30928475-30928501,30929008-30929110,30929287-30929340,
           30929803-30929895,30930063-30930140,30930416-30930527,
           30930618-30930756,30930823-30930910,30930984-30931079,
           30931675-30931781,30931874-30932009,30932089-30932186,
           30932954-30933047,30933132-30933301,30933749-30933819,
           30936066-30936194,30936552-30936654,30936764-30936907,
           30937123-30937245,30937482-30937563,30939044-30939120,
           30939261-30939315,30939365-30939443,30939544-30939620,
           30939739-30939869,30939947-30940120,30940245-30940310,
           30940937-30941572
          Length = 1113

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = -1

Query: 446 RAPTVPA---APIPPQARPGQAQPLQAV 372
           RAP VPA   AP PP   PG  Q  Q V
Sbjct: 165 RAPLVPAPPPAPFPPVPTPGMTQAPQMV 192


>04_04_0146 + 23106325-23108154
          Length = 609

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 449 RRAPTVPAAPIPPQARPGQAQP 384
           RR P VPA   PP  RP  A P
Sbjct: 12  RRPPPVPAQAPPPSPRPWYAAP 33


>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
          Length = 380

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 437 TVPAAPIPPQARPGQAQPLQ 378
           T+P AP PPQ  PG+A P +
Sbjct: 151 TLPPAPFPPQ-HPGRADPAE 169


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 18  LSRQHNYIFFLPGTKPGLFMYAD 86
           ++  HNYI FLP T   LF+ +D
Sbjct: 508 IAEGHNYIEFLPNTVRHLFLCSD 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,081,137
Number of Sequences: 37544
Number of extensions: 140737
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)