Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0325.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       27   7.2  
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 442  HRQCQQHRFHLKHVRGKHN-HFRQFFYLGR 356
            H Q QQH+FH  H    +N H+R F  + R
Sbjct: 1043 HHQ-QQHQFHHHHHHTHYNYHYRHFLIIDR 1071


>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 437  TVPAAPIPPQARPGQAQPLQAV 372
            ++P A IPPQ+ PG   P Q++
Sbjct: 1050 SIPGASIPPQSIPGAFLPPQSI 1071


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,841,533
Number of Sequences: 59808
Number of extensions: 169705
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)