Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0325.Seq
         (449 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat...    30   3.2  
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ...    29   5.5  
AK126463-1|BAC86558.1|  559|Homo sapiens protein ( Homo sapiens ...    29   5.5  
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.             29   5.5  

>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
            SRCAP protein.
          Length = 2971

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 443  APTVPAAPIPPQARPGQAQPLQAVL 369
            AP VPAAP PP  +P  A P  + L
Sbjct: 1222 APVVPAAPGPPSLQPSGASPSASAL 1246


>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
            FLJ46149 fis, clone TESTI4000621, moderately  similar to
            Homo sapiens Snf2-related CBP activator protein (SRCAP).
            ).
          Length = 2427

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 443  APTVPAAPIPPQARPGQAQPLQAVL 369
            AP VPAAP PP   P  A P  + L
Sbjct: 1481 APVVPAAPGPPSLAPSGASPSASAL 1505


>AK126463-1|BAC86558.1|  559|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44499 fis, clone UTERU3000665, highly  similar
           to Homo sapiens Snf2-related CBP activator protein
           (SRCAP). ).
          Length = 559

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 443 APTVPAAPIPPQARPGQAQPLQAVL 369
           AP VPAAP PP   P  A P  + L
Sbjct: 130 APVVPAAPGPPSLAPSGASPSASAL 154


>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
          Length = 3053

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 443  APTVPAAPIPPQARPGQAQPLQAVL 369
            AP VPAAP PP   P  A P  + L
Sbjct: 1304 APVVPAAPGPPSLAPSGASPSASAL 1328


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,230,022
Number of Sequences: 237096
Number of extensions: 767902
Number of successful extensions: 2183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2180
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)