Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0325.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 2.7
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 3.6
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 27 4.8
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 27 8.3
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 27 8.3
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 27 8.3
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 27 8.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 8.3
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 27 8.3
AF016429-3|AAB65366.1| 383|Caenorhabditis elegans Hypothetical ... 27 8.3
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 10 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 102
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -1
Query: 440 PTVP-AAPIPPQARPGQAQP 384
P++P P+PPQ PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 449 RRAPTVPAAPIPPQARPGQAQPLQ 378
++APT AAP PP+ P QA P+Q
Sbjct: 316 QQAPT-RAAPAPPKPAPQQAPPVQ 338
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 449 RRAPTVPAAPIPPQARPGQAQPLQ 378
++AP V AP PP+ + QAQP+Q
Sbjct: 253 QQAPVVQQAP-PPKQQQAQAQPVQ 275
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 449 RRAPTVPAAPIPPQARPGQAQP 384
+RAP++ A P+PP+ + QP
Sbjct: 549 QRAPSIQAPPLPPRLSASEHQP 570
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 449 RRAPTVPAAPIPPQARPGQAQP 384
+RAP++ A P+PP+ + QP
Sbjct: 549 QRAPSIQAPPLPPRLSASEHQP 570
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 449 RRAPTVPAAPIPPQARPGQAQP 384
+RAP++ A P+PP+ + QP
Sbjct: 532 QRAPSIQAPPLPPRLSASEHQP 553
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 449 RRAPTVPAAPIPPQARPGQAQP 384
+RAP++ A P+PP+ + QP
Sbjct: 490 QRAPSIQAPPLPPRLSASEHQP 511
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 434 VPAAPIPPQARPGQAQPLQAVLLP 363
VP +PPQ RP Q P+Q P
Sbjct: 357 VPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 434 VPAAPIPPQARPGQAQPLQAVLLP 363
VP +PPQ RP Q P+Q P
Sbjct: 454 VPIQTLPPQTRPPQLPPVQITQPP 477
>AF016429-3|AAB65366.1| 383|Caenorhabditis elegans Hypothetical
protein T21H3.5 protein.
Length = 383
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 424 HRFHLKHVRGKHNHFRQFFYLGRVQVHRTLPPLRL 320
H+F++K +R N F Y ++RTL + L
Sbjct: 220 HKFYMKSIRNVSNEFIDMGYHDSANINRTLLSIAL 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,087,264
Number of Sequences: 27780
Number of extensions: 129404
Number of successful extensions: 298
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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