Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0324.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K357 Cluster: Putative uncharacterized protein; n=2; ...    36   0.62 
UniRef50_Q7RA50 Cluster: Putative uncharacterized protein PY0665...    35   1.4  
UniRef50_Q7RN79 Cluster: Putative uncharacterized protein PY0194...    34   2.5  
UniRef50_A0E4B7 Cluster: Chromosome undetermined scaffold_78, wh...    32   7.6  

>UniRef50_A5K357 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 2179

 Score = 35.9 bits (79), Expect = 0.62
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 172  KVLYYYTIYHIKLLQTILKIKSGIIKFQFIN*TSVNCFYNGVVSFKDK 29
            K+LYY   +++  L+T LK  +  +KF  IN  +  CF N  +S  +K
Sbjct: 2060 KILYYLNNFNLIQLETFLKSVNSFVKFSLINNFAAFCFLNFFLSTFEK 2107


>UniRef50_Q7RA50 Cluster: Putative uncharacterized protein PY06655;
            n=1; Plasmodium yoelii yoelii|Rep: Putative
            uncharacterized protein PY06655 - Plasmodium yoelii
            yoelii
          Length = 1391

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 172  KVLYYYTIYHIKLLQTILKIKSGIIKFQFIN*TSVNCFYNGVVSFKDK 29
            K+LYY   + I  L++ LK  +  IKF  IN  +  CF N    F  K
Sbjct: 1221 KILYYLNNFSIIQLESFLKSVNSFIKFSLINDFAAFCFLNFFTRFLKK 1268


>UniRef50_Q7RN79 Cluster: Putative uncharacterized protein PY01942;
           n=7; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY01942 - Plasmodium yoelii yoelii
          Length = 1773

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 205 SYTKKNLTVGILYSSMMDLKKLIFHNNCQ 291
           +Y K NL V  + SS ++ ++ IFHNNC+
Sbjct: 270 TYNKNNLNVNEITSSQLECQQNIFHNNCK 298


>UniRef50_A0E4B7 Cluster: Chromosome undetermined scaffold_78, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_78,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1086

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 181 QNTKVLYYYTIY-HIKLLQTILKIKSGIIKFQFIN*TSVNCFYNGVVSFKDKEKGNKV 11
           +N K  YY+  +   K+L  IL +   ++   F++ T  NC+YNG+   K + +  ++
Sbjct: 541 KNNKFYYYFANWTKNKILSMILLVL--VVLMNFLSETLYNCYYNGISLLKAENQDQQI 596


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,182,287
Number of Sequences: 1657284
Number of extensions: 7698476
Number of successful extensions: 14220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14217
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)