Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0324.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    25   0.44 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   5.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.4  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 309 YESFENLTIIMKY----QLL*IHH*TIQNTHSQVFFGIRNGLIK*INKTLK 169
           Y++ +++TI  +Y     L  +   +I+      F G +NGL+K +NK +K
Sbjct: 326 YDNEQSVTIKTEYAKEKNLAGVFIWSIETDDMHEFCGEKNGLLKAVNKAIK 376


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 295 KSDNYYEISTSL 260
           K DNYYE+ T +
Sbjct: 29  KHDNYYELETHI 40


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 295 KSDNYYEISTSL 260
           K DNYYE+ T +
Sbjct: 343 KHDNYYELETHI 354


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 295 KSDNYYEISTSL 260
           K DNYYE+ T +
Sbjct: 576 KHDNYYELETHI 587


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 295 KSDNYYEISTSL 260
           K DNYYE+ T +
Sbjct: 576 KHDNYYELETHI 587


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 250 LNYTKYPQSGFFWYKK 203
           LN+ K+   GFF  KK
Sbjct: 285 LNFPKFTAGGFFHVKK 300


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 231  HSQVFFGIRNGLIK*INKTLKYYIITQYTILN 136
            H Q F+ I  G+I  ++    Y ++  Y+I+N
Sbjct: 1022 HPQEFWCIVPGIIYLLSIPSMYLLLILYSIIN 1053


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 231  HSQVFFGIRNGLIK*INKTLKYYIITQYTILN 136
            H Q F+ I  G+I  ++    Y ++  Y+I+N
Sbjct: 1022 HPQEFWCIVPGIIYLLSIPSMYLLLILYSIIN 1053


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 231  HSQVFFGIRNGLIK*INKTLKYYIITQYTILN 136
            H Q F+ I  G+I  ++    Y ++  Y+I+N
Sbjct: 1022 HPQEFWCIVPGIIYLLSIPSMYLLLILYSIIN 1053


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 231  HSQVFFGIRNGLIK*INKTLKYYIITQYTILN 136
            H Q F+ I  G+I  ++    Y ++  Y+I+N
Sbjct: 1022 HPQEFWCIVPGIIYLLSIPSMYLLLILYSIIN 1053


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,278
Number of Sequences: 336
Number of extensions: 2569
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)