Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0324.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    28   1.0  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   9.7  

>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 187 SFYKTVSYTKKNLTVGILYSSMMDLKKLIFHNN 285
           S ++  S T KN++ G++ S ++  KK + HNN
Sbjct: 130 SSHEKSSKTTKNVSPGVMTSDLIPEKKSVKHNN 162


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 178 FVNSFYKTVSYTKKNLTVGILYSSMMDLKKLIFHN 282
           F N+ +K     KKN  + I +SS++ ++ + F N
Sbjct: 5   FANAKHKLHCLLKKNFLLTIRFSSLVSIQYIPFSN 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,097
Number of Sequences: 5004
Number of extensions: 37065
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)