Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0324.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147...    27   7.5  

>09_06_0243 -
           21813223-21813456,21814266-21814367,21814501-21814701,
           21815591-21815716,21815791-21816072,21816218-21816388,
           21816838-21816999,21817404-21817467,21818136-21818503
          Length = 569

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -1

Query: 383 HR*NVLVYTALAC*---YNPWAYIFFLNMKALKI*QLL*NINFFRSIIELYKIPTVRFFL 213
           H  N +  +  AC     N W +  F+N+ + K+ + L N    R + ELY    +R FL
Sbjct: 304 HHENEIAQSRAACCDSSINYWIHNGFVNVNSQKMSKSLGNFVTIRKVTELYHPLALRMFL 363

Query: 212 V 210
           +
Sbjct: 364 L 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,401,514
Number of Sequences: 37544
Number of extensions: 167590
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)