Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0324.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29549| Best HMM Match : Pox_A21 (HMM E-Value=5)                     28   5.8  
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)               27   7.6  

>SB_29549| Best HMM Match : Pox_A21 (HMM E-Value=5)
          Length = 181

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 302 LSYLKKICKPMDYISK 349
           L+YLKKICK MD + K
Sbjct: 147 LAYLKKICKAMDKVMK 162


>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
          Length = 527

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 152 NIPY*TITNHIKN*KWHYKIPI 87
           +IP  T  NHI    WHY IP+
Sbjct: 502 HIPVTTCHNHITAPTWHYHIPV 523


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,039,063
Number of Sequences: 59808
Number of extensions: 218351
Number of successful extensions: 283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)