Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0324.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine r...    30   1.3  
AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical p...    27   6.7  

>AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein199 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 121 IWFVIV*YGILCNNIVL*CFVNSFYKTVSYTKKN 222
           I+F+I+ Y  + N IV   F N FYK  S+T KN
Sbjct: 102 IYFIII-YFFMLNGIVS-IFENRFYKICSFTSKN 133


>AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical
           protein Y54E5A.7 protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 166 VL*CFVNSFYKTVSYTKKNLTVGILYSSMMDLKKL 270
           V+ C +++FY  V +TK    +GI ++S   LK+L
Sbjct: 160 VIGCGIDTFYHYVFFTKNGKHLGIAHTSPTALKEL 194


>AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical
           protein T28B4.2 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/61 (31%), Positives = 38/61 (62%)
 Frame = -3

Query: 321 IFFKYESFENLTIIMKYQLL*IHH*TIQNTHSQVFFGIRNGLIK*INKTLKYYIITQYTI 142
           +F   +SF NL   + Y++  +H+ T + T+++ FF +RN   K + +T+ YY+I+ + +
Sbjct: 61  VFLVTDSFFNLFCDV-YEIS-LHY-TTEPTNAEFFFSLRN--CKTVMRTI-YYVISPFQL 114

Query: 141 L 139
           L
Sbjct: 115 L 115


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -3

Query: 369  FGIHCTGLLI*SMGLHIFFKYESFENLTIIMK-----YQLL*IHH*TIQNTHSQVFFGIR 205
            F +H TG+     G HI  K   FEN+++I +     +  L +    + + H  +    +
Sbjct: 1935 FHVHRTGITALPHGSHIVEKTFLFENMSMIFRRPMRPWDALEVSFEILMSNHETLLIFSQ 1994

Query: 204  NGLIK*INKTLKYYIITQYTILNYYK 127
                K +++     I T++ +L Y K
Sbjct: 1995 QRFSKLVSQYATKLIATEHQLLAYTK 2020


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -3

Query: 369  FGIHCTGLLI*SMGLHIFFKYESFENLTIIMK-----YQLL*IHH*TIQNTHSQVFFGIR 205
            F +H TG+     G HI  K   FEN+++I +     +  L +    + + H  +    +
Sbjct: 1935 FHVHRTGITALPHGSHIVEKTFLFENMSMIFRRPMRPWDALEVSFEILMSNHETLLIFSQ 1994

Query: 204  NGLIK*INKTLKYYIITQYTILNYYK 127
                K +++     I T++ +L Y K
Sbjct: 1995 QRFSKLVSQYATKLIATEHQLLAYTK 2020


>U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical
           protein C44B7.11 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 367 WYTLHWLADIIHGL 326
           WYT HWLA + +GL
Sbjct: 381 WYTRHWLALVAYGL 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,394,074
Number of Sequences: 27780
Number of extensions: 196237
Number of successful extensions: 364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)