Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0323.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.0  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   2.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 445 CHTGTPATEDPVPHPRLPRNHSFARRQGS 531
           CH G P ++ P  H  +P     ++  GS
Sbjct: 128 CHNGDPLSQPPPAHMGIPPYQLDSKTAGS 156


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 445 CHTGTPATEDPVPHPRLPRNHSFARRQGS 531
           CH G P ++ P  H  +P     ++  GS
Sbjct: 20  CHNGDPLSQPPPAHMGIPPYQLDSKTAGS 48


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/29 (24%), Positives = 13/29 (44%)
 Frame = +1

Query: 451 TGTPATEDPVPHPRLPRNHSFARRQGSYV 537
           T  P  ++P P    PR H +   +  ++
Sbjct: 93  TSRPKLQEPQPSQHCPRKHGYFAHEEPHI 121


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 349 LSFSYVCRRVPLNLRSDPWKKVAVRRRS*SNSCHTG 456
           L  +++CR  P +       +   RRR+ SN CH G
Sbjct: 162 LGKTFMCR-CPPDWEGTTLSQSPNRRRASSNPCHNG 196


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 469 EDPVPHPRLPRNHSFARRQGS 531
           +D V H R PRN +  R+Q S
Sbjct: 107 KDAVQHERGPRNSTLRRQQMS 127


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 469 EDPVPHPRLPRNHSFARRQGS 531
           +D V H R PRN +  R+Q S
Sbjct: 107 KDAVQHERGPRNSTLRRQQMS 127


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 292 GRIKWTSDFWTELPIS 339
           G  +W+S +W  LPI+
Sbjct: 913 GLDQWSSFYWNLLPIA 928


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 292 GRIKWTSDFWTELPIS 339
           G  +W+S +W  LPI+
Sbjct: 913 GLDQWSSFYWNLLPIA 928


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,390
Number of Sequences: 336
Number of extensions: 2195
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)