Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0323.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 28 1.0
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 27 1.8
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 4.2
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 26 4.2
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 25 5.6
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 7.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.7
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 9.7
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.7
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 25 9.7
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 118 SALPSLIGRRLRHYSLRPQRILLTPP 41
SAL L R L H ++PQ +LL PP
Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 100 SVMGVLKTCSDDNVALCLKEKALRYVENVSNSRE 201
S MG+LK DD++ + ++ LR+ S ++
Sbjct: 192 SPMGILKNIQDDSMTIVTNKRILRFEPKTSRGKD 225
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 166 LRYVENVSNSRELNLIDGVS----LIGQGSPRSAGPSSLYPTSPEPGRIKWTSDFWTELP 333
L N+S++ +++L+ ++ SP+S P +Y +S P S + + LP
Sbjct: 191 LNSTNNISHNPQVSLMSASLSKNLVLDPASPKSVSPDLVYVSSDNPPVSTAASAYSSSLP 250
Query: 334 IS 339
IS
Sbjct: 251 IS 252
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 159 FLETQCDVVIGASFQHSHH*SEDVFVIIR 73
+LE Q ++ G HH S+DVF++IR
Sbjct: 231 YLELQRNICQGNLSCWDHHYSDDVFLLIR 259
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 5.6
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +3
Query: 168 AICGKCLEFSRTQLNRWRQSDRXRLP*ISRSFEPLPDEPR---ARENQVDL-RLLDGVAD 335
AIC +E L+ W S R +LP + +S DE R ARE + DL L +
Sbjct: 185 AICSAVME----DLHEWLFSIRQKLPLVGKSCSQQIDEARRRWAREYKEDLVNLSSKTSI 240
Query: 336 FLENFVIQL 362
LE +++++
Sbjct: 241 SLELYLLEM 249
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 204 EFSRIRDIFHISQSFFLE 151
E SRI D+ HI + FF++
Sbjct: 508 ELSRISDLLHIKKHFFVD 525
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 277 TSPEPGRIKWTSDFWTELPISWRTLSFSYV 366
TSP+PG +W T+ I+ + + F+ +
Sbjct: 199 TSPKPGEFEWQPGVLTQAVITGKWILFTNI 228
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 24.6 bits (51), Expect = 9.7
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +1
Query: 79 NDEDVFRSVMGVLKTCSDDN-VALCLKE--KALRYVEN--VSNSRELNLID--GVSLIGQ 237
ND++ F++ + LKT DN C+ AL ++ N V +SR ID +LI
Sbjct: 316 NDKEEFKATVDALKTVGIDNDTCECIFSLLAALLHIGNIEVKHSRNDAYIDSKNENLINA 375
Query: 238 GSPRSAGPSSL 270
S PSSL
Sbjct: 376 TSLLGVDPSSL 386
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Frame = +3
Query: 153 QGKSFAICGKCLEFSR-----TQLNRWRQS 227
+GK A+C CL F+ Q+N W Q+
Sbjct: 936 EGKMLAVCFSCLIFNELIMVALQINTWEQT 965
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 244 PRSAGPSSLYPTSPEPG 294
PR A P+ YP P PG
Sbjct: 62 PRYAMPTMFYPNKPTPG 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,458
Number of Sequences: 5004
Number of extensions: 38823
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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