Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0323.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0050 + 14469879-14470072,14470620-14471094                       29   1.8  
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    28   4.3  
10_08_0801 + 20670795-20671730                                         28   5.6  
03_06_0722 - 35751490-35754357                                         27   7.5  
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314...    27   7.5  
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    27   7.5  

>10_08_0050 + 14469879-14470072,14470620-14471094
          Length = 222

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 273 VKARRTC*SRGALXDQTDAID*VEFSRIRDIFHISQSFFL 154
           +K  RTC  R A   +  +ID +E S+  D FH+  SFFL
Sbjct: 1   MKVERTCHDRYAANWEKVSID-IEGSKRGDSFHLPPSFFL 39


>03_01_0458 -
           3521938-3522024,3522133-3522213,3522673-3522806,
           3523189-3523270,3523420-3523692,3523953-3524162,
           3524252-3524337,3525197-3525289,3526003-3526227,
           3526320-3526930,3529328-3529395,3529491-3529679,
           3529773-3529901,3530013-3532484
          Length = 1579

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 223 SLIGQGSPRSAGPSSLYPTSPEPGRIKWTSDFWTELPISWRTLSF 357
           S+ G  + R  G S     SP  GR+    +FW  +P+  R L+F
Sbjct: 293 SVSGHRADRRKGGSRKAAASPVSGRMNQVREFWATVPMD-RRLAF 336


>10_08_0801 + 20670795-20671730
          Length = 311

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +1

Query: 217 GVSLIGQGSPRSAGPSSLYPTSPEPGRIKWTSDFW--TELPISWRTLSFSYVC 369
           GVS     S  SA PS   PT   P R    S  W  T+L    RT+SF   C
Sbjct: 210 GVSSASAESAASAAPSPRTPTPYSPARTP-ASPMWLVTDLLRRRRTVSFEDYC 261


>03_06_0722 - 35751490-35754357
          Length = 955

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 436 SNSCHTGTPATEDPVPHPRLPRNHSFAR 519
           SNS  T T     PVP PR PR    +R
Sbjct: 24  SNSKPTATKTQTPPVPKPRSPRRQGASR 51


>02_01_0432 -
           3144560-3144655,3144792-3144832,3145019-3145094,
           3145465-3145542,3146121-3146208,3146613-3146686,
           3147445-3147579,3147699-3147770,3148239-3148325,
           3148418-3148522,3149028-3149085,3149576-3149634,
           3149960-3150056,3150217-3150317,3150443-3150487,
           3150619-3150681,3151082-3151147,3151286-3151342,
           3151570-3151656,3152063-3152239,3152413-3152625
          Length = 624

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 236 KAPLDQQVLRAFTRRA-QSQGESSGPQTFGRSCRFLGEL 349
           K  L+   L+A TR + Q + ESS    FG  C FLG L
Sbjct: 332 KLQLNDAALKAVTRFSMQFEPESSSAMGFGFRCGFLGLL 370


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 154 KEKALRYVENVSNSRELNLIDGVSLIGQGSPR 249
           KEK+ +    ++ ++++ L+DGV ++   SPR
Sbjct: 483 KEKSSQAKRKLAKTKKMQLLDGVVVVSTSSPR 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,186
Number of Sequences: 37544
Number of extensions: 283005
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)