Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0323.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      31   0.62 
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_23961| Best HMM Match : Pentaxin (HMM E-Value=5.5e-08)              28   5.8  
SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    28   5.8  
SB_32744| Best HMM Match : Sulfatase (HMM E-Value=0)                   28   5.8  
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  

>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 217  GVSLIGQGSPRSAGPSSLYPTSPEPGRIKWTSDFWTELPIS 339
            G+SL+  G  RSA PSS + ++P PG  + +     + P++
Sbjct: 1300 GISLLQTGPSRSALPSSFFTSTPMPGTPRTSERSTPDTPLN 1340


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 214 DGVSLIGQGSPRSAGPSSLYPTSPEP 291
           D + + GQG   S  P S++PT+P P
Sbjct: 541 DSICVSGQGGQSSNEPDSMFPTAPIP 566


>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = -2

Query: 130 RSKFSALPSLIGR-RL----RHYSLRPQRILLTPPGA 35
           R++F   PS++ R RL    +  + RP+RI+ +PPGA
Sbjct: 126 RTRFMRTPSVMDRHRLWTLRKEVAFRPRRIIYSPPGA 162


>SB_23961| Best HMM Match : Pentaxin (HMM E-Value=5.5e-08)
          Length = 405

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 274 PTSPEPGRIKWTSDFWTELPISWRTLSFSY 363
           PT P P   K+T+ FW +L + +RT+ FSY
Sbjct: 202 PTLPTP--TKFTACFWLQLIVDYRTV-FSY 228


>SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 109 PSLIGRRLRHYSLRPQRILLTPPGASWF 26
           P+  G +LR+ S  PQ + + PP   W+
Sbjct: 4   PNKRGHQLRNLSSNPQGLAIRPPSVLWY 31


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 444 GVASTSSSXRDLLPRIASQIQWHPSADVAE*QSSPRNRQLRPKV 313
           G+   S   RDL  ++A++++  PS      +SSPR R ++  V
Sbjct: 33  GLRPRSEEKRDLFLQLANEVKTSPSPVRKRRRSSPRKRHVQATV 76


>SB_32744| Best HMM Match : Sulfatase (HMM E-Value=0)
          Length = 485

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 220 VSLIGQGSPRSAGPSSLYPTSPEPGRIKWTSDFWTE 327
           + L G  +P S    SL P     G ++W SDF  E
Sbjct: 346 IELAGGKAPSSMDGRSLLPLLNAKGAVEWRSDFLVE 381


>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/83 (26%), Positives = 32/83 (38%)
 Frame = +1

Query: 244 PRSAGPSSLYPTSPEPGRIKWTSDFWTELPISWRTLSFSYVCRRVPLNLRSDPWKKVAVR 423
           P   G S + P   +P ++  ++    E P S R  + +   + VP+   S     V  R
Sbjct: 385 PSDQGTSDVSPGEVQPTQVPLSAPSPGETPRSRRQEASNRQLKTVPVPQTSPEQLVVRPR 444

Query: 424 RRS*SNSCHTGTPATEDPVPHPR 492
           R          T    DPVP PR
Sbjct: 445 RGPFKRQSPKQTSVETDPVPLPR 467


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,651
Number of Sequences: 59808
Number of extensions: 329232
Number of successful extensions: 979
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)