Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0323.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   5.1  
U41014-1|AAK32947.3|  641|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 34/130 (26%), Positives = 52/130 (40%)
 Frame = +1

Query: 115 LKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSAGPSSLYPTSPEPG 294
           LKT ++ NV    KEK +   +  S S  + +IDG +    GS     PS+   T+    
Sbjct: 286 LKTKTEINVE---KEKEVEEKKKDSESELVQVIDGSTGNSTGSTVETTPSTSTTTTSSTT 342

Query: 295 RIKWTSDFWTELPISWRTLSFSYVCRRVPLNLRSDPWKKVAVRRRS*SNSCHTGTPATED 474
               T+   TE P      S + +   +P +  S+P   + V+ R  S     G   T  
Sbjct: 343 STTTTTTTTTETP------STTVITTTIP-STTSEPEATIDVKTRD-SKEDTNGVLPTSS 394

Query: 475 PVPHPRLPRN 504
            +  P  P N
Sbjct: 395 AIETPPYPEN 404


>Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical
           protein C04C11.2 protein.
          Length = 584

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 274 PTSPEPGRIKWTSDFWTELP 333
           P  PEPG  +W  DF   LP
Sbjct: 82  PGKPEPGHFQWIGDFTYSLP 101


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 6/131 (4%)
 Frame = +1

Query: 115 LKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSAGPSSLYPTSPEPG 294
           +++C + +    +  +A  Y+  + N R  N  D VS + + S         +  SP   
Sbjct: 545 VESCGEASRVKVIGNRACAYI-TMENRRSAN--DVVSKMREVSVAKKMVKVYWARSPGMD 601

Query: 295 RIKWTSDFWT------ELPISWRTLSFSYVCRRVPLNLRSDPWKKVAVRRRS*SNSCHTG 456
             ++ SD W       E+P     L    +C    L++ S P +K  + + +        
Sbjct: 602 SDQF-SDLWDSNRGVLEIPYEKLPLDLVALCEGAMLDIESLPIEKKLLYKETGETVISIP 660

Query: 457 TPATEDPVPHP 489
            P  + PVPHP
Sbjct: 661 PPNIQPPVPHP 671


>U41014-1|AAK32947.3|  641|Caenorhabditis elegans Hypothetical
           protein C06G1.4 protein.
          Length = 641

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 223 SLIGQGSPRSAGPSSLYPTSPEPGRIKWTSDFWTE 327
           SL GQ +P S G    +P     G  K + DFW +
Sbjct: 118 SLGGQSAPWSIGSQPAHPVWSNGGMGKESDDFWKQ 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,281,823
Number of Sequences: 27780
Number of extensions: 229179
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)