Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0323.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   6.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +1

Query: 304 WTSDFWTELPISWRTLSFSYV-CRRVPLN 387
           W +  WT+  + W    F+ +   RVP N
Sbjct: 57  WVTQIWTDHHLKWNASEFAGIRVIRVPYN 85


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 448 HTGTPATEDPVPHPRLPRNHSFARRQGSY 534
           H G   ++  +P+PR P  +    R  +Y
Sbjct: 65  HYGAAGSQQDMPYPRFPPYNRMDMRNATY 93


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +1

Query: 223 SLIGQGSPRSAGPSSLYPTSPEPGRIKWTSDFWTELPISWRTLSFSYVCRR 375
           SLI  G+       S  P   + G  KW S   T++ +    L    +C++
Sbjct: 54  SLIIPGNVNMIRTHSTXPXEEDDGPYKWISPGDTKVMVEHGELVMGILCKK 104


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 460  PATEDPVPHPRLPRNH 507
            P +  P P P  PRNH
Sbjct: 1852 PVSGSPEPPPPPPRNH 1867


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 448 HTGTPATEDPVPHPRLPRNH 507
           HTG    E P  H R  R+H
Sbjct: 4   HTGEKPFECPECHKRFTRDH 23


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 304 WTSDFWTELPISWRTLSF 357
           W +  WT+  +SW+   F
Sbjct: 94  WMTLMWTDSHLSWKPSDF 111


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 356 NDKVLQEIGNSVQKSEVHLI 297
           NDK+LQE+    QK    ++
Sbjct: 401 NDKILQEVIKFRQKQRAEIL 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,318
Number of Sequences: 438
Number of extensions: 2922
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)