Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0322.Seq
(598 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q76IN5 Cluster: Reverse transcriptase; n=1; Anopheles g... 71 2e-11
UniRef50_Q9U8F6 Cluster: Reverse transcriptase; n=1; Nasonia vit... 44 0.002
UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba... 43 0.005
UniRef50_UPI0000499D34 Cluster: reverse transcriptase; n=16; Ent... 43 0.006
UniRef50_Q76IN4 Cluster: Reverse transcriptase; n=20; Entamoeba ... 38 0.14
UniRef50_UPI0000499012 Cluster: hypothetical protein 157.t00015;... 36 0.72
UniRef50_Q3C2G6 Cluster: Reverse transcriptase; n=1; Hasarius ad... 36 0.96
UniRef50_Q7BW12 Cluster: ATP-binding protein; n=6; Cyanobacteria... 34 2.9
UniRef50_UPI0000498C2B Cluster: hypothetical protein 51.t00029; ... 33 5.1
UniRef50_A1I8V6 Cluster: Putative uncharacterized protein; n=1; ... 33 6.7
UniRef50_Q4YTK0 Cluster: Putative uncharacterized protein; n=4; ... 33 6.7
>UniRef50_Q76IN5 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1209
Score = 70.9 bits (166), Expect = 2e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Frame = -1
Query: 547 IXIAVPNTNNXQKPIA*KVNKYTELKEEILRIWXMNKVYIVPLVLSSTGVIPKHLLQSLK 368
I IAV +N Q + KV KY +L EE+ + W + + IVP+++S+TG++P LL+SL
Sbjct: 1119 IDIAVTLDHNVQTTFSTKVMKYHDLAEELKQTWYLEDIRIVPVIISATGIVPMALLRSLD 1178
Query: 367 ILDIAENTYMTMQKAAILNTCRIVRQFL 284
L++ + +QKA IL TC +R+FL
Sbjct: 1179 ELEL-QRELPRIQKAVILRTCSTLRRFL 1205
Score = 45.6 bits (103), Expect = 9e-04
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -1
Query: 157 YWDRDIITDKTTTNNRPDITLTLKDRK-ITYLIDIAIPNSENIRKKYTEKIKK 2
YWDR+IITD NRPDI + K +K T IDIA+ N++ ++ K+ K
Sbjct: 1087 YWDREIITDILIRANRPDILVYEKRKKRATIDIDIAVTLDHNVQTTFSTKVMK 1139
>UniRef50_Q9U8F6 Cluster: Reverse transcriptase; n=1; Nasonia
vitripennis|Rep: Reverse transcriptase - Nasonia
vitripennis (Parasitic wasp)
Length = 1265
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/73 (26%), Positives = 40/73 (54%)
Frame = -1
Query: 496 KVNKYTELKEEILRIWXMNKVYIVPLVLSSTGVIPKHLLQSLKILDIAENTYMTMQKAAI 317
K+ KY ++ + R N ++P+V+ S G IP+ ++L L I ++ ++T+ A+
Sbjct: 1193 KIGKYRQILSSLRRDLHSNAEEVIPIVIGSRGAIPRETRKALSKLGIGKSDWLTISLIAL 1252
Query: 316 LNTCRIVRQFLQE 278
++ IV F+ +
Sbjct: 1253 RSSLEIVNAFMDD 1265
>UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba
histolytica|Rep: Reverse transcriptase - Entamoeba
histolytica
Length = 801
Score = 43.2 bits (97), Expect = 0.005
Identities = 22/66 (33%), Positives = 39/66 (59%)
Frame = -1
Query: 553 HLIXIAVPNTNNXQKPIA*KVNKYTELKEEILRIWXMNKVYIVPLVLSSTGVIPKHLLQS 374
++I +A+ NN + K+NKY EL+E+I + V I+P++LS G+I K ++
Sbjct: 735 YIIDVAICQDNNLELNYIHKINKYKELQEKIRNNRELIYVEIIPVILSINGLIHKESVRR 794
Query: 373 LKILDI 356
+K L +
Sbjct: 795 VKSLKL 800
Score = 33.9 bits (74), Expect = 2.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 142 IITDKTTTNNRPDITLTLKDRKITYLIDIAIPNSENIRKKYTEKIKK 2
I++D + RPDI K Y+ID+AI N+ Y KI K
Sbjct: 711 IVSDHSFHARRPDIYYQNMKEKKGYIIDVAICQDNNLELNYIHKINK 757
>UniRef50_UPI0000499D34 Cluster: reverse transcriptase; n=16;
Entamoeba histolytica HM-1:IMSS|Rep: reverse
transcriptase - Entamoeba histolytica HM-1:IMSS
Length = 223
Score = 42.7 bits (96), Expect = 0.006
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = -1
Query: 550 LIXIAVPNTNNXQKPIA*KVNKYTELKEEILRIWXMNKVYIVPLVLSSTGVIPKHLLQSL 371
L+ +A+ NN + K+NKY EL+E++ + V I+P++LS G+I K ++ L
Sbjct: 97 LVNVAICQDNNLELNYIHKINKYKELQEKLRNNREIIYVEIIPVILSINGLIHKESVRRL 156
Query: 370 KILDI 356
K L +
Sbjct: 157 KSLKL 161
>UniRef50_Q76IN4 Cluster: Reverse transcriptase; n=20; Entamoeba
histolytica|Rep: Reverse transcriptase - Entamoeba
histolytica
Length = 861
Score = 38.3 bits (85), Expect = 0.14
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = -1
Query: 574 DKINKVVHLIXIAVPNTNNXQKPIA*KVNKYTELKEEILRIWXMNKVYIVPLVLSSTGVI 395
D K +I + + N K K+N Y++L E I +I + +V ++P+V++ +G+I
Sbjct: 737 DLNKKEAMIIDMTIVRDKNISKAFTDKINMYSKLHEHIRKIERLVRVIVIPVVITVSGLI 796
Query: 394 PK 389
K
Sbjct: 797 NK 798
>UniRef50_UPI0000499012 Cluster: hypothetical protein 157.t00015;
n=28; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 157.t00015 - Entamoeba histolytica HM-1:IMSS
Length = 375
Score = 35.9 bits (79), Expect = 0.72
Identities = 26/78 (33%), Positives = 39/78 (50%)
Frame = -1
Query: 589 IYLLIDKINKVVHLIXIAVPNTNNXQKPIA*KVNKYTELKEEILRIWXMNKVYIVPLVLS 410
IY+L DK NK L +N K N Y ELK +++I + V I+P+V+S
Sbjct: 240 IYVL-DKKNKTGLLFDKTNVEYHNINGAYWKKRNMYKELKNMLMKIEKIKDVRIIPVVIS 298
Query: 409 STGVIPKHLLQSLKILDI 356
G+I ++ +K L I
Sbjct: 299 INGLINNSSVKLIKELKI 316
>UniRef50_Q3C2G6 Cluster: Reverse transcriptase; n=1; Hasarius
adansoni|Rep: Reverse transcriptase - Hasarius adansoni
Length = 484
Score = 35.5 bits (78), Expect = 0.96
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -1
Query: 514 QKPIA*KVNKYTELKEEILRIWXMNKVYIVPLVLSSTGVIPKHLLQSLKILDIAENTYM- 338
++ A K+ KY ++ ++P+V+ TG +P + +LK L I+ + +M
Sbjct: 401 ERGAAEKIRKYRPALPVAAQLLRAESASVLPIVVGDTGAMPPQTIAALKRLGISADMHMR 460
Query: 337 TMQKAAILNTCRIVRQFLQED 275
T+ A+ ++ I F+ D
Sbjct: 461 TISLVALRSSIEIYHMFMDYD 481
>UniRef50_Q7BW12 Cluster: ATP-binding protein; n=6;
Cyanobacteria|Rep: ATP-binding protein - Synechococcus
sp. (strain PCC 7942) (Anacystis nidulans R2)
Length = 289
Score = 33.9 bits (74), Expect = 2.9
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = -1
Query: 475 LKEEILRIWXMNKVYIVPLVLSSTGVIPKHLLQSLKILDIAENTYMTMQKAAILNTCR-I 299
L+EE+LRIW NK+ +V + T I + LL S +I+ ++ T+++ L R
Sbjct: 200 LQEEVLRIWEANKLSVVLI----THSIDEALLLSDRIVVMSRGPRATIREVIDLPAVRPR 255
Query: 298 VRQFLQEDLNILQVEMKL 245
R ++ED ++++++L
Sbjct: 256 QRSVIEEDERFVKIKLRL 273
>UniRef50_UPI0000498C2B Cluster: hypothetical protein 51.t00029;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 51.t00029 - Entamoeba histolytica HM-1:IMSS
Length = 327
Score = 33.1 bits (72), Expect = 5.1
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = -1
Query: 496 KVNKYTELKEEILRIWXMNKVYIVPLVLSSTGVIPKHLLQSLKILDIAENTYMTMQKAAI 317
K N Y ELK +++I + V I P+V+S G++ K ++ +K + I + ++ I
Sbjct: 16 KRNMYKELKNILMKIEKLKDVRINPVVISINGLVNKESIRIIKEIKIDIDIEKEIKNLVI 75
Query: 316 LNTCRIVRQFLQE-----DLNILQVEMKLTWLRPVIFIIP 212
N + V ++ + + +L+ E + T L +FI+P
Sbjct: 76 KN-MKDVMEYCGDHNQTYSVELLEEEDEGTGLILKLFILP 114
>UniRef50_A1I8V6 Cluster: Putative uncharacterized protein; n=1;
Candidatus Desulfococcus oleovorans Hxd3|Rep: Putative
uncharacterized protein - Candidatus Desulfococcus
oleovorans Hxd3
Length = 124
Score = 32.7 bits (71), Expect = 6.7
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 186 CFSKYLRY-FGIMKITGLSQVSFISTCRIFRSSCKN*RTIR-HVFNIAAFCMVMYVFSAM 359
CF + RY G++K T F+ C +SC + R I H FN AF FSA
Sbjct: 29 CFFLFSRYRIGVLK-TSFYFRGFLRRC----TSCMDSRIISCHSFNREAFSDAFSAFSAF 83
Query: 360 SNIFKDWSRCLGIT 401
+ D S C G+T
Sbjct: 84 EEVLLDLS-CCGVT 96
>UniRef50_Q4YTK0 Cluster: Putative uncharacterized protein; n=4;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 725
Score = 32.7 bits (71), Expect = 6.7
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -1
Query: 121 TNNRPDITLTLKDRKITYLIDIAIPNSENIRKKYTEKI 8
TNN D +K++KI L+DI N E+I K+Y EKI
Sbjct: 526 TNNEKD---KIKEKKINDLVDIDKINDEDILKQYGEKI 560
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,133,848
Number of Sequences: 1657284
Number of extensions: 9038051
Number of successful extensions: 24313
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24272
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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