Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0322.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    29   0.39 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   1.6  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    27   2.7  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    26   4.8  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   4.8  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    25   6.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.3  
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    25   6.3  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   8.4  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   8.4  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -1

Query: 400 VIPKHLLQSLKILDIAENTYMTMQKAAILNTCRIVRQFLQEDLNIL 263
           ++ K +L +LKI D  E  + T+Q+A +  T     +F+Q +L I+
Sbjct: 315 LLSKIILLNLKISDY-EKAFSTLQQALLFLTSSFFNEFVQNNLEII 359


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 371 KNIRHSRKHVHDHAKSRNIKH 309
           +   HSR+H H H++ R  KH
Sbjct: 20  RETNHSRRHRHHHSRHRESKH 40


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -1

Query: 274 LNILQVEMKLTWLRPVIFIIPKYLKYFEKHNTKE 173
           +N++Q+ ++L  L+P+  ++PK   +   +N  E
Sbjct: 250 MNVMQIILQLVSLKPIALLLPKLPSWNPTNNAGE 283


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 457 RIWXMNKVYIVPLVLSSTGVIPKHLLQSLKILDIAENTYMTMQK 326
           +++  N    V +  SS G+   H+ +    LDI  +TY  + K
Sbjct: 11  KVFKRNNFKYVAIAASSIGLAAYHIRKDAIALDIPNSTYQHVSK 54


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 445 MNKVYIVPLVLSSTGVIPKHLLQSLKILDIAENTYMTMQKAAILNT 308
           +N + +    L+    +P H L  L  LDI+EN    ++    L T
Sbjct: 268 INNLNLSSTSLADVAELPVHTLHKLTFLDISENNIRDIRSLDHLRT 313


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 271 NILQVEMKLTWLRPVIFIIPKYLKY 197
           N L V MKL +  P++F+I  Y  +
Sbjct: 353 NYLLVPMKLLFTEPIVFLITLYSSF 377


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 165 YYVSFVLCFSKYLRYFGIMKITGLSQVSFISTCRIFRSSC 284
           Y V  ++C + Y  Y  I  +   SQ SF++T +I+R  C
Sbjct: 301 YPVLSIICPTLYSVYKDIFDL--FSQRSFLATSKIYRRLC 338


>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 298 LYGMCLILRLFAWSCTCFLLCLIFLK 375
           L+G+CL+  L  ++  CF+  ++ LK
Sbjct: 70  LFGICLLGSLACYAIACFMFPVLVLK 95


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 139 ITDKTTTNNRPDITLTLKDRKITYLID 59
           I DK+  NN PDI + L++  I +  D
Sbjct: 479 IVDKSRLNNTPDILILLEEVDILFQDD 505


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 162 YYYVSFVLCFSKYLRYFGIMKITGLSQ 242
           Y Y+SF   + K LRY G ++  GL++
Sbjct: 94  YNYLSFNDIYDKALRYAGALRKLGLNK 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,681
Number of Sequences: 5004
Number of extensions: 41806
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)